This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAM2.1

Display Name: Nigeria/LOC_000PAM2.1/2020-01-20
Daodu, O. B.; Shaibu, J. S.; Audu, R. A.; Oluwayelu, D. O.

Submission details

Submission ID
PP645435.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
University of Ilorin, Department of Veterinary Microbiology, Faculty of Veterinary Medicine

Alignment and QC metrics S

Completeness S
51.32%
Frame shifts S
NP:146-483(nt:489-1504)
Length S
844
Total ambiguous nucs S
0
Total deleted nucs S
14
Total frame shifts S
1
Total inserted nucs S
0
Total SNPs S
10
Total unknown nucs S
0

Sample details

Earliest release date
2025-01-10
Collection country
Nigeria
Collection date
2020-01-20
Collection date (lower bound)
2020-01-20
Collection date (upper bound)
2020-01-20
Isolate name
CCHFV/NGR/ILN/2021/F101

Host

Host name scientific
Hyalomma truncatum
Host taxon id
72855

INSDC

INSDC accession S
PP645435.1
NCBI release date
2025-01-10

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C473A
  • S:C529T
  • S:A639G
  • S:C712T
  • S:A956G
  • S:G1123A
  • S:T1195G
  • S:C1249T
  • S:T1306G
  • S:C1309T
    • Deletions
    S:475-488
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions
    Deletions
    NP:141-145
    Insertions
    None

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