This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAL4.1

Display Name: Nigeria/LOC_000PAL4.1/2019-12-02
Daodu, O. B.; Shaibu, J. S.; Audu, R. A.; Oluwayelu, D. O.

Submission details

Submission ID
PP645434.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
University of Ilorin, Department of Veterinary Microbiology, Faculty of Veterinary Medicine

Alignment and QC metrics S

Completeness S
73.44%
Length S
1228
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
23
Total unknown nucs S
0

Sample details

Earliest release date
2025-01-10
Collection country
Nigeria
Collection date
2019-12-02
Collection date (lower bound)
2019-12-02
Collection date (upper bound)
2019-12-02
Isolate name
CCHFV/NGR/ILN/2021/F22

Host

Host name scientific
Hyalomma truncatum
Host taxon id
72855

INSDC

INSDC accession S
PP645434.1
NCBI release date
2025-01-10

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G229A
  • S:T253C
  • S:A298G
  • S:A322G
  • S:G346A
  • S:A358T
  • S:C370T
  • S:G397A
  • S:C445T
  • S:A639G
  • S:A791G
  • S:A793G
  • S:G811A
  • S:C829T
  • S:T847C
  • S:A956G
  • S:C958T
  • S:T976C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:H195R
  • NP:I246V
  • NP:S301G
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue