This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAK6.1

Display Name: Iran/LOC_000PAK6.1
Salehi-Vaziri, M.; Tavakoli, M.; Farhan Asadi, L. F. A.; Mohammadi, T.; Jalai, T.; Marzieh Sajadi, S.; Gerdooei, S.; Ghalyanchi Langeroudi, A.; Khakifirouz, S.; Arbabi, F.; Pouriayevali, M. H.

Submission details

Submission ID
PP496956.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Pasteur Institute of Iran, Department of Arboviruses and VHFs (National Ref. Lab.)

Alignment and QC metrics S

Completeness S
36.24%
Length S
606
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
51
Total unknown nucs S
0

Sample details

Earliest release date
2024-03-26
Collection country
Iran
Collection date (upper bound)
2024-03-26
Isolate name
Iran-9434

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession S
PP496956.1
NCBI release date
2024-03-26

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G67A
  • S:G99A
  • S:C154A
  • S:T157C
  • S:C160T
  • S:C166T
  • S:C178A
  • S:G189A
  • S:T199C
  • S:G202A
  • S:A209G
  • S:T211C
  • S:G229A
  • S:C235T
  • S:A247G
  • S:G259A
  • S:G271A
  • S:T289C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
  • NP:R45K
  • NP:S52G
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
    • Deletions
    None
    Insertions
    None

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