This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAFF.1

Spain/LOC_000PAFF.1/2016-08
A. Negredo, F. de la Calle-Prieto, E. Palencia-Herrejon, M. Mora-Rillo, J. Astray-Mochales, M. P. Sanchez-Seco, E. Bermejo Lopez, J. Menarguez, A. Fernandez-Cruz, B. Sanchez-Artola, E. Keough-Delgado, E. Ramirez de Arellano, F. Lasala, J. Milla, J. L. Fraile, M. Ordobas Gavin, A. Martinez de la Gandara, L. Lopez Perez, D. Diaz-Diaz, M. A. Lopez-Garcia, P. Delgado-Jimenez, A. Martin-Quiros, E. Trigo, J. C. Figueira, ..., A. I. Negredo

Institute of Health 'Carlos III', Virology

Sample details

Collection date
2016-08
Earliest release date
2017-07-27
Sampling location
Spain
Isolate name
201643792

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-07-27
INSDC accession S segment

Submission details

Submission ID
KY492289.1.S
Submitting group
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:02:34 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S segment
3
Length S segment
592 (32.8%)
Variant S segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T165C
  • A311G
  • G330A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K91R
Deletions
N/A
Insertions
N/A

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