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LOC_000PAFF.1
Download
Download FASTA
Download metadata TSV
Russia/LOC_000PAFF.1/2007
A. Volynkina,
A. Burlachenko,
Y. Lisitskaya &
E. Kotenev
Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections
Sample details
Collection date
2007
Earliest release date
2016-06-01
Sampling location
Russia
Isolate name
73-STV/HU-2007
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-01 15:13
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-06-01
INSDC accession L segment
KR822008.1
INSDC accession S segment
KR815325.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KR822008.1.L/KR815325.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-01 15:13:21 UTC
Date released
2026-06-01 15:17:45 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PAFF.1.embl
Alignment and QC
Total SNPs L segment
42
Length L segment
437 (3.61%)
Total SNPs S segment
78
Length S segment
538 (29.8%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L segment
T
131
A
C
148
T
T
151
C
T
154
C
T
160
C
T
163
C
T
202
C
T
218
C
T
229
C
A
240
C
T
241
C
T
253
C
T
254
A
G
264
A
C
265
T
A
268
G
C
276
T
C
284
A
Show more
S segment
C
99
T
A
105
G
G
118
A
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
C
171
T
A
186
G
T
195
C
C
201
T
A
213
G
T
219
C
C
228
T
G
231
A
T
234
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
RdRp
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
S segment
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