This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAFF.1

Display Name: China/LOC_000PAFF.1/2010-04
Y. Hu, F. Yu, Q. Song, R. Zhu, L. Jia, L. Liu, H. Dong, J. Deng & Y. Qian

Sample details

Collection date
2010-04
Collection date (lower bound)
2010-04-01
Collection date (upper bound)
2010-04-30
Earliest release date
2022-10-16
Collection country
China
Collection subdivision level 1
Beijing
Isolate name
CVA16/DS663/BJ/2010

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 14:32insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Capital Institute of Pediatrics, Laboratory of Virology

INSDC

NCBI release date
2022-10-16
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
7334
Total SNPs CV-A16
1511
Total inserted nucs CV-A16
18
Total deleted nucs CV-A16
21
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
98.97%

Submission details

Submission ID
MZ671841.1.CV-A16
Submitting group
Date submitted
2025-10-14 14:32:52 UTC
Date released
2025-10-14 15:14:38 UTC

Clade

Clade CV-A16
B1

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A67G
  • C71T
  • G89A
  • T95C
  • C100T
  • T103G
  • G122C
  • C128A
  • T130C
  • T131A
  • G137A
  • T138A
  • C151T
  • C159T
  • T162C
  • C194T
  • G224A
  • C236T
    • Deletions
    119, 120, 583, 696, 715-719, 728, 734, 735, 750, 7332-7339
    Insertions
    ins_89:A, ins_125:A, ins_699:TCAAGGC, ins_7345:AGCTCAAAG

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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