This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAFF.1

Italy/LOC_000PAFF.1/2011-01-01
S. Ravagnan, S. Cazzin, G. Da Rold, E. Porcellato, S. Carlin, F. Montarsi, G. Capelli, A. Schivo & I. Monne

Istituto Zooprofilattico Sperimentale delle Venezie, Parasitology department

Sample details

Collection date
2011
Earliest release date
2015-11-01
Sampling location
Italy
Isolate name
1968/11

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2015-11-01
NCBI update date
2015-11-01
INSDC accession

Host

Host

Submission details

Submission ID
KT364513.1
Submitting group
Date submitted
2026-09-09 16:34:10 UTC
Date released
2026-09-09 16:48:32 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
89
Total inserted nucs
35
Total deleted nucs
15
Length
616 (5.4%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C10179A
  • G10185T
  • A10190G
  • A10191G
  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10218G
  • C10219A
  • G10224A
  • C10230T
  • C10242T
  • C10243T
  • A10255C
  • G10258A
  • A10263C
  • C10266T
Deletions
10421, 10435, 10444, 10467-10470, 10487-10494
Insertions
ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10427:G, ins_10440:TT, ins_10452:AGA, ins_10461:AG, ins_10483:GTT, ins_10501:T

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
Deletions
N/A
Insertions
N/A

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