This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Enterovirus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Enterovirus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000PAFF.1
Download
Download FASTA
Download metadata TSV
China/LOC_000PAFF.1/2008-11-17
H.-P. Zhu,
F. Xu,
P.-P. Yao,
Z.-N. Yang,
Y.-S. Sun,
H.-J. Lv,
X.-L. Zhou &
Z.-Y. Zhu
Key Lab of Vaccine against Hemorrhagic Fever with Renal Syndrome, Zhejiang Provincial Center for Disease Control and Prevention
Sample details
Collection date
2008-11-17
Earliest release date
2017-07-11
Sampling location
China
Isolate name
839
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-24 17:59
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-07-11
NCBI update date
2017-07-11
INSDC accession
KY014080.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY014080.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-24 17:58:47 UTC
Date released
2026-06-24 18:04:13 UTC
Clade
Clade EV-A71
C4
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
1467
Total inserted nucs
8
Total deleted nucs
11
Length
7405 (100%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
C
28
T
T
36
C
C
38
T
T
48
A
T
51
C
A
54
T
T
61
C
A
76
G
T
95
C
T
99
C
G
100
A
A
101
G
C
106
A
T
138
C
T
142
C
G
143
A
G
145
A
T
149
C
Show more
Deletions
20, 103, 104, 119, 120, 693, 707, 743, 7333-7335
Insertions
ins_10:C, ins_128:C, ins_701:CT, ins_738:GCT, ins_7327:G
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
I
53
T
2A:
N
57
D
2A:
Y
64
C
2A:
R
68
M
2A:
V
82
I
2A:
F
83
Y
2A:
E
88
K
2A:
E
102
Q
2A:
S
129
N
2B
2B:
R
11
D
2B:
D
19
E
2B:
H
31
Y
2B:
V
47
I
2B:
S
85
A
2B:
M
95
I
2C
2C:
I
21
V
2C:
F
22
S
2C:
I
37
V
2C:
K
41
R
2C:
V
60
I
2C:
A
75
V
2C:
I
81
S
2C:
R
151
H
2C:
A
173
T
2C:
V
200
I
2C:
T
271
S
2C:
N
315
S
3A
3A:
E
39
D
3A:
T
47
A
3B
3B:
P
9
Q
3B:
I
10
V
3B:
V
15
A
3C
3C:
A
18
V
3C:
I
36
V
3C:
V
49
I
3C:
I
54
V
3C:
V
75
I
3C:
C
89
F
3C:
V
93
N
3C:
T
95
S
3C:
G
96
T
3C:
I
109
M
3C:
P
144
A
3C:
I
157
V
3C:
I
158
V
3C:
A
169
G
3D
3D:
M
6
V
3D:
R
10
K
3D:
V
33
I
3D:
T
44
H
3D:
V
74
I
3D:
T
75
K
3D:
Q
76
E
3D:
D
89
E
3D:
N
91
D
3D:
K
94
Q
3D:
Y
106
N
3D:
V
134
T
3D:
T
138
V
3D:
L
143
S
3D:
N
154
Y
3D:
S
163
R
3D:
L
165
I
3D:
R
169
K
Show more
VP1
VP1:
K
18
R
VP1:
P
22
H
VP1:
P
30
Q
VP1:
D
31
N
VP1:
A
54
S
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
240
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
I
249
V
VP1:
S
275
A
VP1:
D
282
N
VP1:
T
289
A
VP2
VP2:
N
45
S
VP2:
P
94
Q
VP2:
N
143
D
VP2:
S
144
T
VP2:
M
198
I
VP2:
T
200
A
VP2:
F
224
Y
VP3
VP3:
D
93
N
VP3:
M
100
L
VP3:
T
232
A
VP3:
E
237
Q
VP3:
A
239
G
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue