This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAFF.1

India/LOC_000PAFF.1/2013
P. D. Yadav, D. Y. Patil, A. M. Shete, P. Kokate, P. Goyal, S. Jadhav, S. Sinha, D. Zawar, S. K. Sharma, A. Kapil, D. K. Sharma, K. J. Upadhyay & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2013
Earliest release date
2016-11-25
Sampling location
India
Isolate name
NIV1312492

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-14 12:58insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-11-25
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
KT384390.1.L/KT384392.1.M/KT384399.1.S
Submitting group
Date submitted
2026-05-14 12:58:49 UTC
Date released
2026-05-14 13:03:23 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
135
Length L segment
1067 (8.81%)
Total SNPs M segment
67
Length M segment
973 (17.8%)
Total SNPs S segment
189
Length S segment
1449 (80.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • A6190G
  • A6192G
  • G6193A
  • C6194G
  • A6195C
  • C6196A
  • T6199C
  • C6205T
  • A6214C
  • A6217G
  • A6220G
  • A6223G
  • T6265C
  • T6269C
  • G6274A
  • T6286A
  • T6292C
  • G6296A

M segment

  • A3973G
  • A3979G
  • G3988A
  • G4009A
  • G4012A
  • T4015C
  • G4042A
  • C4057T
  • T4093C
  • G4096A
  • T4102C
  • G4111A
  • T4118C
  • A4126T
  • C4129T
  • T4138C
  • C4153T
  • T4168C

S segment

  • G43A
  • A44G
  • A47T
  • C48T
  • T63C
  • A84G
  • A98T
  • A102G
  • C126T
  • T141C
  • C150T
  • T166C
  • A173G
  • G174A
  • G180A
  • C183T
  • A186G
  • C198T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:F1344L
  • GPC:T1451S
  • GPC:S1530G
  • GPC:G1589S
  • GPC:I1597L
  • GPC:T1601S
  • GPC:T1604A
  • GPC:I1607V
  • GPC:G1616W

NP

  • NP:E2R
  • NP:N3I
  • NP:Y20F
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:K354R
  • NP:R428K

RdRp

  • RdRp:E2039G
  • RdRp:H2040A
  • RdRp:V2074I
  • RdRp:K2110R
  • RdRp:V2123I
  • RdRp:Q2127R
  • RdRp:K2128R
  • RdRp:I2134T
  • RdRp:V2148A
  • RdRp:S2197G
  • RdRp:A2330T
Deletions
N/A
Insertions
N/A

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