This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PA6Z.1

Turkey/LOC_000PA6Z.1/2016-05-01
E. Dincer, A. Brinkmann, O. Hekimoglu, S. Hacioglu, K. Foldes, Z. Karapinar, P. F. Polat, B. Oguz, O. Orunc Kilinc, P. Hagedorn, N. Ozer, A. Ozkul, A. Nitsche & K. Ergunay

Hacettepe University Faculty of Medicine, Department of Medical Microbiology Virology Unit

Sample details

Collection date
2016-05-01
Earliest release date
2017-07-24
Sampling location
Turkey
Isolate name
MG48

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-07-24
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
KY979162.1.L/KY979163.1.M/KY979164.1.S
Submitting group
Date submitted
2026-03-16 20:49:52 UTC
Date released
2026-03-16 20:53:41 UTC

Host

Host

Lineage

Segment S Lineage
VI

Files

Annotations

Alignment and QC

Total SNPs L
2633
Total inserted nucs L
23
Total deleted nucs L
11
Length L
11988 (98.9%)
Variant L
False
Total SNPs M
933
Total inserted nucs M
7
Total deleted nucs M
9
Total ambiguous nucs M
1
Length M
3852 (71.8%)
Variant M
True
Total SNPs S
303
Total deleted nucs S
13
Length S
1484 (89.5%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C94T
  • T106C
  • A113C
  • T115G
  • A124G
  • T131A
  • C133A
  • C136T
  • T139C
  • G142A
  • A147G
  • T151A
  • T157C
  • G166A
  • G172T
  • G175A
  • G190A
  • C196T

M

  • C1415T
  • T1418C
  • T1419C
  • A1421G
  • T1426C
  • T1427A
  • C1430T
  • T1433A
  • G1434A
  • C1435T
  • G1437A
  • G1439A
  • G1442A
  • T1445C
  • T1448G
  • C1451A
  • A1452G
  • T1455G

S

  • C154T
  • T157C
  • C166T
  • G169A
  • G171A
  • T175A
  • C178G
  • T181C
  • G190A
  • G196A
  • T198A
  • T199C
  • G202A
  • C214A
  • G229A
  • C244T
  • T253C
  • G256T
Deletions

L

11935, 12050-12059

M

5235-5243

S

1584-1593, 1615-1617
Insertions

L

ins_11969:ACCCAGCAT, ins_12017:GTCGTGATCAATTC

M

ins_5168:GCTGTAG

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:I445T
  • GPC:A448M
  • GPC:V449I
  • GPC:H453Q
  • GPC:I454V
  • GPC:Y455A
  • GPC:H456Y
  • GPC:V459T
  • GPC:F460L
  • GPC:I467V
  • GPC:V468I
  • GPC:K471R
  • GPC:N473D
  • GPC:L481I
  • GPC:F482T
  • GPC:D484N
  • GPC:R490K
  • GPC:V492I

NP

  • NP:S39N
  • NP:F48Y
  • NP:A100T
  • NP:G101S
  • NP:V117I
  • NP:T124S
  • NP:G125S
  • NP:V141I
  • NP:A146T
  • NP:E161D
  • NP:V163L
  • NP:M164V
  • NP:S165P
  • NP:L179I
  • NP:G185S
  • NP:V198I
  • NP:D199E
  • NP:V205I

RdRp

  • RdRp:I13L
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:D55N
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:L64I
  • RdRp:E66K
  • RdRp:S67T
  • RdRp:R70Q
  • RdRp:Q74L
  • RdRp:E75D
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:K91Q
  • RdRp:L94S
  • RdRp:A122T
  • RdRp:S124N
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue