This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PA6Z.1

Spain/LOC_000PA6Z.1/2016-08
A. Negredo, F. de la Calle-Prieto, E. Palencia-Herrejon, M. Mora-Rillo, J. Astray-Mochales, M. P. Sanchez-Seco, E. Bermejo Lopez, J. Menarguez, A. Fernandez-Cruz, B. Sanchez-Artola, E. Keough-Delgado, E. Ramirez de Arellano, F. Lasala, J. Milla, J. L. Fraile, M. Ordobas Gavin, A. Martinez de la Gandara, L. Lopez Perez, D. Diaz-Diaz, M. A. Lopez-Garcia, P. Delgado-Jimenez, A. Martin-Quiros, E. Trigo, J. C. Figueira, ..., A. I. Negredo

Institute of Health 'Carlos III', Virology

Sample details

Collection date
2016-08
Earliest release date
2017-07-27
Sampling location
Spain
Isolate name
201643792

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-13 15:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-07-27
INSDC accession S

Submission details

Submission ID
KY492290.1.S
Submitting group
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:47:29 UTC

Host

Host

Lineage

Segment S Lineage
III

Files

annotations

Alignment and QC

Total SNPs S
42
Length S
592 (35.4%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C178A
  • T181C
  • G189A
  • T199C
  • G202A
  • G229A
  • C235T
  • A247G
  • G271A
  • C295T
  • A298G
  • A322G
  • A327G
  • G346A
  • A355G
  • A358C
  • C370T
  • G397A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
Deletions
N/A
Insertions
N/A

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