This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PA19.1

Display Name: Iran/LOC_000PA19.1/2022
Sarmadi, S.; Najafi, H.; Ziafati Kafi, Z.; Sadri, N.; Jamiri, F.; Bakhshi, A.; Abbassioun, A.; Ghalyanchi Langeroudi, A.

Submission details

Submission ID
PP107910.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
University of Tehran, Microbiology & Immunology

Alignment and QC metrics S

Completeness S
9.21%
Length S
154
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
27
Total unknown nucs S
0

Sample details

Earliest release date
2024-01-24
Collection country
Iran
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Isolate name
UT-SS1

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession S
PP107910.1
NCBI release date
2024-01-24

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T334G
  • S:A337G
  • S:C343T
  • S:G346A
  • S:A358G
  • S:C361T
  • S:G367A
  • S:C370T
  • S:A379G
  • S:A394G
  • S:G397A
  • S:C400T
  • S:C403A
  • S:C406T
  • S:G409C
  • S:G418A
  • S:G421A
  • S:A425T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:T124S
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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