This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9L5.1

South_Africa/LOC_000P9L5.1/2001
K. Kondiah, R. Swanepoel, J. T. Paweska, F. J. Burt & B. Ashkettle

NHLS/UFS, Medical Virology

Sample details

Collection date
2001
Earliest release date
2008-12-30
Sampling location
South Africa
Isolate name
SPU 51/01

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession M segment

Host

Host

Submission details

Submission ID
FJ435400.1.M
Submitting group
Date submitted
2026-09-14 14:08:44 UTC
Date released
2026-09-14 14:10:07 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
94
Total inserted nucs M segment
1
Length M segment
412 (7.53%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • T4876C
  • C4882G
  • A4889T
  • C4890T
  • T4894C
  • T4897C
  • A4898G
  • C4900T
  • C4903T
  • T4910A
  • T4913C
  • G4936A
  • T4951C
  • C4957T
  • C4975T
  • C4982T
  • A4984G
  • C4987T
Deletions
N/A
Insertions

M segment

ins_5162:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:T1601L
  • GPC:T1604A
  • GPC:L1608M
  • GPC:T1644I
  • GPC:R1661K
Deletions
N/A
Insertions
N/A

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