This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Test organism (without consensus sequences)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
Browse
Submit
SeqSets
Login
Loculus
Browse
Submit
SeqSets
Login
Docs
API docs
LOC_000P944.1
Download
Download FASTA
Download metadata TSV
Display Name: Kazakhstan/LOC_000P944.1/2018
G. N. Abuova,
N. Y. Pshenichnaya,
L. S. Karan,
F. A. Berdaliyeva,
D. S. Aliyev,
D. K. Sadyhova,
T. V. Polukchi &
S. D. Nurmagambet
Submission details
Submission ID
OQ190967.1.M/OQ190966.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 22:27:27 UTC
Date released
2025-06-30 22:31:24 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-30 22:27
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Central Research Institute of Epidemiology, Department of molecular diagnostic and epidemiology
Alignment and QC metrics M
Completeness M
97.47%
Length M
5220
Total ambiguous nucs M
0
Total deleted nucs M
12
Total frame shifts M
0
Total inserted nucs M
2
Total SNPs M
610
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
91.33%
Length S
1530
Total ambiguous nucs S
0
Total deleted nucs S
3
Total frame shifts S
0
Total inserted nucs S
6
Total SNPs S
200
Total unknown nucs S
0
Sample details
Earliest release date
2023-06-10
Collection subdivision level 1
Turkestan region
Collection country
Kazakhstan
Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Isolate name
KAZ/18/2018
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession M
OQ190967.1
INSDC accession S
OQ190966.1
NCBI release date
2023-06-10
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
M:
A
112
G
M:
C
119
T
M:
A
128
G
M:
G
136
A
M:
G
143
A
M:
A
146
G
M:
G
149
A
M:
T
152
C
M:
A
158
G
M:
A
169
G
M:
A
174
G
M:
G
175
A
M:
G
189
A
M:
A
192
G
M:
C
194
T
M:
A
195
G
M:
A
203
G
M:
C
204
T
Show more
S
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
181
C
S:
T
182
C
S:
T
220
C
S:
G
229
A
S:
C
235
T
S:
C
241
T
S:
A
247
G
S:
T
250
A
S:
G
262
A
S:
A
268
C
S:
G
271
A
S:
T
277
C
S:
T
283
C
Show more
Deletions
M:5163, M:5289-5299, S:1529, S:1530, S:1617
Insertions
ins_S:1536:CCCT, ins_S:1612:C, ins_S:1577:A, ins_M:5169:GG
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
C
15
Y
GPC:
E
26
G
GPC:
R
28
E
GPC:
D
33
N
GPC:
T
34
A
GPC:
M
35
V
GPC:
P
38
S
GPC:
G
39
S
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
49
R
GPC:
A
51
T
GPC:
S
53
P
GPC:
I
54
V
GPC:
L
56
P
GPC:
P
58
S
GPC:
G
69
E
Show more
NP
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue