This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P90C.1

South_Africa/LOC_000P90C.1/1986
F. J. Burt, J. T. Paweska, B. Ashkettle & R. Swanepoel

NHLS/UFS, Medical Virology

Sample details

Collection date
1986
Earliest release date
2008-12-30
Sampling location
South Africa
Isolate name
SPU 566/86

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession L

Host

Host

Submission details

Submission ID
FJ435375.1.L
Submitting group
Date submitted
2026-09-11 12:57:02 UTC
Date released
2026-09-11 12:58:59 UTC

Files

Annotations

Alignment and QC

Total SNPs L
47
Length L
754 (6.23%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G2173A
  • T2182C
  • C2200T
  • T2227A
  • G2233A
  • A2263G
  • C2287T
  • T2290C
  • G2302A
  • T2347C
  • C2353T
  • T2359C
  • G2367A
  • G2374A
  • A2375G
  • G2385A
  • T2389C
  • G2401A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:N779S
  • RdRp:I783T
  • RdRp:S789T
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:V882I
Deletions
N/A
Insertions
N/A

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