This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8ZE.1

Display Name: China/LOC_000P8ZE.1/1984
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR823871.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 11:38:38 UTC
Date released
2025-04-03 11:43:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-03 11:38insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
100.00%
Length L
12498
Total ambiguous nucs L
0
Total deleted nucs L
5
Total frame shifts L
0
Total inserted nucs L
395
Total SNPs L
1588
Total unknown nucs L
0

Sample details

Earliest release date
2024-12-21
Collection country
China
Collection date
1984
Collection date (lower bound)
1984-01-01
Collection date (upper bound)
1984-12-31

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession L
OR823871.1
NCBI release date
2024-12-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A7G
  • L:G23T
  • L:T24C
  • L:A35G
  • L:G43C
  • L:T49C
  • L:A50G
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:G88A
  • L:G93A
  • L:A109G
  • L:G116A
  • L:A124G
    • Deletions
    L:11966, L:11967, L:11981, L:11982, L:12086
    Insertions
    ins_L:14:CACACCCAGCTCA, ins_L:0:CCTGTGACATGGGAAAGGGGTCATTAATTTGTAATT, ins_L:11924:G, ins_L:8:GGTCCTGCTTCCTAGCTCTGCTGAACTCTGGGATTACAGGAAT, ins_L:12069:TTCTTTGCTGTTTATATCAGTTTCATTATTTCCAGGGTGTGGGGGGAACGATACCAGGGATTAAATTAGGTC, ins_L:12057:TACC, ins_L:12078:GCATTTCCTCCACTGTAGTATTGTAGAAAGTCTCAATGTCACGAAGA, ins_L:12044:CAACT, ins_L:58:T, ins_L:12108:TCGACCCC, ins_L:12027:CTCT, ins_L:12040:ATCGCTTCACTACAGTT, ins_L:11973:A, ins_L:12092:CTTCAGTAACAAAGTTTAT, ins_L:11961:GT, ins_L:12060:CTGC, ins_L:12105:CTCCC, ins_L:16:GTTTAATTTGAGTGTGTGGGGGCTTAGAGGCTAGTTATGG, ins_L:3:GGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTTTGGTTTCCTGA, ins_L:12072:CACAT, ins_L:11977:A, ins_L:11922:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:S6N
  • RdRp:A14T
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:T165A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:T200A
  • RdRp:S205P
  • RdRp:N206Y
    • Deletions
    None
    Insertions
    None

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