This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8YG.1

South_Africa/LOC_000P8YG.1/1987
F. J. Burt, J. T. Paweska, B. Ashkettle & R. Swanepoel

NHLS/UFS, Medical Virology

Sample details

Collection date
1987
Earliest release date
2008-12-30
Sampling location
South Africa
Isolate name
SPU 383/87

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession L
INSDC accession S

Host

Host

Submission details

Submission ID
FJ435373.1.L/FJ435416.1.S
Submitting group
Date submitted
2026-09-11 12:57:02 UTC
Date released
2026-09-11 12:58:59 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs L
45
Length L
754 (6.23%)
Total SNPs S
39
Length S
436 (26.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T2182C
  • C2200T
  • T2227A
  • G2233A
  • A2263G
  • C2287T
  • T2290C
  • G2302A
  • T2347C
  • C2353T
  • T2359C
  • G2367A
  • G2374A
  • A2375G
  • G2385A
  • G2398A
  • G2401A
  • C2410A

S

  • G189A
  • T199C
  • G202A
  • A209G
  • C217T
  • G229A
  • C235T
  • C238T
  • A247G
  • G271A
  • C295T
  • A298G
  • A322G
  • A325G
  • A327G
  • G346A
  • A355G
  • A358C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R45K
  • NP:S52G
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q

RdRp

  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:N779S
  • RdRp:I783T
  • RdRp:S788G
  • RdRp:S789T
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:V882I
Deletions
N/A
Insertions
N/A

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