This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8RW.1

Display Name: China/LOC_000P8RW.1/1966
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047185.1.L/OR047165.1.M/OR047145.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
100.00%
Length L
12168
Total ambiguous nucs L
0
Total deleted nucs L
16
Total frame shifts L
0
Total inserted nucs L
76
Total SNPs L
1570
Total unknown nucs L
0

Alignment and QC metrics M

Completeness M
100.00%
Length M
5368
Total ambiguous nucs M
0
Total deleted nucs M
6
Total frame shifts M
0
Total inserted nucs M
8
Total SNPs M
1018
Total unknown nucs M
0

Alignment and QC metrics S

Completeness S
100.00%
Length S
1672
Total ambiguous nucs S
0
Total deleted nucs S
2
Total frame shifts S
0
Total inserted nucs S
2
Total SNPs S
208
Total unknown nucs S
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1966
Collection date (lower bound)
1966-01-01
Collection date (upper bound)
1966-12-31

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession L
OR047185.1
INSDC accession M
OR047165.1
INSDC accession S
OR047145.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G23T
  • L:A35G
  • L:G43C
  • L:T49C
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:G88A
  • L:G93A
  • L:A109G
  • L:A124G
  • L:T125C
  • L:T131A
  • L:C136T
  • L:T139C

    • M

  • M:T40A
  • M:G50A
  • M:A51G
  • M:G56A
  • M:A61G
  • M:A69G
  • M:T71A
  • M:C77A
  • M:A80G
  • M:T86C
  • M:C92T
  • M:C96T
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A104G
  • M:A108G
  • M:A112G

    • S

  • S:T48C
  • S:A53T
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T181C
  • S:T182C
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G256A
  • S:G262A
    • Deletions
    L:11916, L:11917, L:11921, L:11966, L:11967, L:11981, L:11982, L:12044-12047, L:12069-12073, M:5218-5223, S:1615, S:1633
    Insertions
    ins_S:1536:C, ins_S:1577:A, ins_M:5169:GG, ins_M:5231:TTTGCT, ins_L:11924:GTCTG, ins_L:12061:CACAACT, ins_L:12027:CTCT, ins_L:11973:A, ins_L:12064:GG, ins_L:11977:A, ins_L:11961:GT, ins_L:12083:GCTATTT, ins_L:12053:TC, ins_L:12076:TTA, ins_L:12096:GTTTATATCAGTTTCATTATTTCCAGGGTGTGGGGGGAACG, ins_L:58:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:I9V
  • GPC:L12P
  • GPC:C15W
  • GPC:G16S
  • GPC:G18E
  • GPC:E19G
  • GPC:G22V
  • GPC:S23P
  • GPC:R28K
  • GPC:K31G
  • GPC:D33G
  • GPC:T34I
  • GPC:M35T

    • NP

  • NP:D116E
  • NP:T124A
  • NP:G125S
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:I277T
  • NP:S301G
  • NP:N399D
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:Y17H
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163V
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue