This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8HC.1

Display Name: China/LOC_000P8HC.1/2004
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047178.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
100.00%
Length L
12232
Total ambiguous nucs L
0
Total deleted nucs L
6
Total frame shifts L
0
Total inserted nucs L
130
Total SNPs L
1511
Total unknown nucs L
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession L
OR047178.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T10C
  • L:G23T
  • L:A35G
  • L:G43C
  • L:T49C
  • L:A50G
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:G88A
  • L:G93A
  • L:A109G
  • L:T131A
  • L:T139C
  • L:T151C
    • Deletions
    L:11974-11978, L:12096
    Insertions
    ins_L:12091:AGTTGCCAG, ins_L:11922:TC, ins_L:12083:TACCATTCATTTCATTTTCA, ins_L:12105:TCTCAA, ins_L:12067:ATTCTTCTG, ins_L:11991:GCTG, ins_L:11987:C, ins_L:12070:TTCCGCC, ins_L:12108:TTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATG, ins_L:58:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:E126D
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:I223M
  • RdRp:K275R
    • Deletions
    None
    Insertions
    None

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