This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8FH.1

Display Name: China/LOC_000P8FH.1/1979
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047176.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
100.00%
Length L
12296
Total ambiguous nucs L
0
Total deleted nucs L
11
Total frame shifts L
0
Total inserted nucs L
199
Total SNPs L
1574
Total unknown nucs L
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1979
Collection date (lower bound)
1979-01-01
Collection date (upper bound)
1979-12-31

INSDC

INSDC accession L
OR047176.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A6G
  • L:C13T
  • L:A15C
  • L:G23T
  • L:A35G
  • L:G43C
  • L:T49C
  • L:A50G
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:G88A
  • L:G93A
  • L:A109G
  • L:A124G
    • Deletions
    L:11966, L:11967, L:11981, L:11982, L:12044-12047, L:12069-12071
    Insertions
    ins_L:18:TC, ins_L:12083:GCTATTT, ins_L:12061:CACAACT, ins_L:12027:CTCT, ins_L:12104:CATTATTTCCAGGTCTAGGGCGCGGGCCCGGGTGGAGCCGCCGCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAAC, ins_L:12095:AGTT, ins_L:58:T, ins_L:12101:AG, ins_L:12108:ACTTTGAA, ins_L:11924:G, ins_L:10:GACCCCTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAGCCT, ins_L:12053:TT, ins_L:12063:CGG, ins_L:11922:T, ins_L:11977:A, ins_L:0:TTTCTTGCTTGTTGGGACCCAAATTGA, ins_L:11961:GT, ins_L:11973:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    None
    Insertions
    None

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