This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8CP.1

Display Name: China/LOC_000P8CP.1/1968
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047173.1.L/OR047133.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
100.00%
Length L
12420
Total ambiguous nucs L
0
Total deleted nucs L
10
Total frame shifts L
0
Total inserted nucs L
322
Total SNPs L
1561
Total unknown nucs L
0

Alignment and QC metrics S

Completeness S
99.94%
Length S
1727
Total ambiguous nucs S
0
Total deleted nucs S
14
Total frame shifts S
0
Total inserted nucs S
70
Total SNPs S
208
Total unknown nucs S
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1968
Collection date (lower bound)
1968-01-01
Collection date (upper bound)
1968-12-31

INSDC

INSDC accession L
OR047173.1
INSDC accession S
OR047133.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C2A
  • L:C4T
  • L:A9G
  • L:A11T
  • L:C13T
  • L:G23T
  • L:T33C
  • L:A35G
  • L:G43C
  • L:T49C
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:G93A
  • L:A109G

    • S

  • S:C21T
  • S:C25G
  • S:C28T
  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T181C
  • S:T182C
  • S:G229A
  • S:C235T
  • S:T250A
    • Deletions
    L:11981, L:11982, L:12004, L:12005, L:12034, L:12069-12073, S:6-16, S:1615, S:1661, S:1662
    Insertions
    ins_S:1666:GGTTTAAACTGGCATTTA, ins_S:1672:GATTACTATATGCTGGTGT, ins_S:34:TCGGTTCCCAG, ins_S:22:AAAGGC, ins_S:32:ACCAAAAATATAAGA, ins_S:1577:A, ins_L:12083:GCTATTT, ins_L:11996:TG, ins_L:58:T, ins_L:12063:CAACTGTTGG, ins_L:12096:GTTT, ins_L:17:TAAACTTACTTTTTGATTTTGTTGTTTTTTTAGCAAGTTTAAAATTGAACTTAAATTCATTTTTTGG, ins_L:0:GCTGTTTTGTTAATTATTCAC, ins_L:12076:TA, ins_L:12108:CTGTAAGTTTTAAATGTAAAATGCTTCCTTACAAGTTGCCTAAAAATGTATTACTATCACGTTTCTGGATCCAAAGAACTACCAAAATGTACGTAATGGCACCCACATGGTAAATTCATT, ins_L:11973:A, ins_L:11930:AA, ins_L:12053:TT, ins_L:13:TTCCGTTCCAGAAGAGCTGTCCCTCTTTTGGCTAT, ins_L:12027:C, ins_L:11977:A, ins_L:12102:GTTTCATTATTTCCAGGGTGTGGGGGGAACGCCACCACTGCCCGGC

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:T124A
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:K206I
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:G113D
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue