This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8AT.1

Display Name: China/LOC_000P8AT.1/1984
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047171.1.L/OR047131.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
99.37%
Length L
12167
Total ambiguous nucs L
0
Total deleted nucs L
10
Total frame shifts L
0
Total inserted nucs L
145
Total SNPs L
1577
Total unknown nucs L
0

Alignment and QC metrics S

Completeness S
99.88%
Length S
1700
Total ambiguous nucs S
0
Total deleted nucs S
16
Total frame shifts S
0
Total inserted nucs S
46
Total SNPs S
214
Total unknown nucs S
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1984
Collection date (lower bound)
1984-01-01
Collection date (upper bound)
1984-12-31

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession L
OR047171.1
INSDC accession S
OR047131.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G88A
  • L:G93A
  • L:A109G
  • L:G116A
  • L:A124G
  • L:T131A
  • L:C136T
  • L:T139C
  • L:C148T
  • L:T151C
  • L:T154C
  • L:T160C
  • L:C199T
  • L:C208T
  • L:A220G
  • L:T229C
  • L:T241C
  • L:T250C

    • S

  • S:C4A
  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G91A
  • S:G99A
  • S:A118G
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:C187A
  • S:G229A
  • S:C235T
    • Deletions
    L:11966, L:11967, L:11981, L:11982, L:12044-12047, L:12068, L:12069, S:9-11, S:1590-1601, S:1615
    Insertions
    ins_S:1530:T, ins_S:15:GAAGATCTATCTCCTCAGAGAAGTGGTCCAACTGGAGCTGG, ins_S:0:ATT, ins_S:1577:A, ins_L:11924:G, ins_L:12061:CACAACT, ins_L:12027:CTCT, ins_L:11973:A, ins_L:12064:GG, ins_L:11977:A, ins_L:12083:GCTATTT, ins_L:11922:T, ins_L:11961:GT, ins_L:12053:CT, ins_L:12108:CATCAATCCCCCCTCTACCCACGTTGACACAGACAGCTCCGGTAGTGGTTCTTTGTCCTTATTAAACCATGGACTT, ins_L:12096:GTTTATATCAGTTTCATTATTTCCAGGGTGTGGGGGGAACG

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:T320S
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:A14T
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:T165A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:T200A
  • RdRp:S205P
  • RdRp:N206Y
    • Deletions
    None
    Insertions
    None

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