LOC_000P88X.1

Display Name: China/LOC_000P88X.1/1975

Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID

OR047169.1.L/OR047149.1.M/OR047129.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2025-03-11 18:18:53 UTC

Date released

2025-03-11 18:23:22 UTC

Data use terms

Changed	User	Data Use Terms
2025-03-11 18:18	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

Authors

Author affiliations

Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L

100.00%

Length L

12168

Total ambiguous nucs L

Total deleted nucs L

Total frame shifts L

Total inserted nucs L

Total SNPs L

1573

Total unknown nucs L

Alignment and QC metrics M

Completeness M

99.98%

Length M

5483

Total ambiguous nucs M

Total deleted nucs M

Total frame shifts M

Total inserted nucs M

129

Total SNPs M

602

Total unknown nucs M

Alignment and QC metrics S

Completeness S

99.70%

Length S

1688

Total ambiguous nucs S

Total deleted nucs S

Total frame shifts S

Total inserted nucs S

Total SNPs S

213

Total unknown nucs S

Sample details

Earliest release date

2023-08-21

Collection country

China

Collection date

1975

Collection date (lower bound)

1975-01-01

Collection date (upper bound)

1975-12-31

Host

Host name scientific

Ixodoidea

Host taxon id

297308

INSDC

INSDC accession L

OR047169.1

INSDC accession M

OR047149.1

INSDC accession S

OR047129.1

NCBI release date

2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

L:T10C

L:G23T

L:A35G

L:G43C

L:T49C

L:A50G

L:C63G

L:C64T

L:T65C

L:T66C

L:G69A

L:G71T

L:G88A

L:G93A

L:A109G

L:A124G

L:T131A

L:C136T

M

M:T68C

M:G76A

M:A80G

M:C85T

M:A88G

M:C92T

M:A107G

M:A112G

M:A117G

M:C119T

M:C126T

M:A128G

M:G136A

M:A146G

M:G149A

M:C162A

M:A163G

M:A174G

S

S:T48C

S:G54A

S:A61G

S:C64T

S:G67A

S:G91A

S:G99A

S:A118G

S:C139T

S:C142T

S:T157C

S:C166T

S:C178A

S:T182C

S:C187A

S:G229A

S:C235T

S:T250A

Deletions

L:11966, L:11967, L:11981, L:11982, L:12044-12047, L:12069-12071, M:5289-5299, S:1615, S:1633

Insertions

ins_S:1530:T, ins_S:2:AATGGCAATGGCAAACA, ins_S:0:CCCA, ins_S:1577:A, ins_M:5:TCTTGACTGCGTGCCGCCACT, ins_M:5361:ACCTACTAGGTAT, ins_M:5366:ATCAATCTCCCAAGGGTAATTCCACAGAAATCCCAGGGGCTTGGAGTAAACAAGACCGCGCCTAGCCCAGCTAGAG, ins_M:5168:G, ins_M:5364:ACCAGTTTCTGCATTGCT, ins_L:12083:GCTATTT, ins_L:12106:TTATTTCCAGGGTGTGGGGG, ins_L:58:T, ins_L:12101:AG, ins_L:11924:G, ins_L:12096:GTTT, ins_L:12063:CGG, ins_L:12108:ACGATTTCTTCTGAA, ins_L:12053:TT, ins_L:11922:T, ins_L:11977:A, ins_L:11961:GT, ins_L:11973:A, ins_L:12027:CTCT, ins_L:12061:CACAACT

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

GPC:Y7C

GPC:I9V

GPC:C15Y

GPC:H24S

GPC:R28E

GPC:D33N

GPC:T34V

GPC:M35V

GPC:N41S

GPC:P42Q

GPC:S44P

GPC:P47L

GPC:A51T

GPC:S53P

GPC:I54V

GPC:P58S

GPC:L70P

GPC:G85E

NP

NP:R15K

NP:D44E

NP:T111I

NP:D116E

NP:T124A

NP:G125N

NP:N150H

NP:H195R

NP:D199E

NP:A229T

NP:I246V

NP:D262E

NP:R270K

NP:S275N

NP:Y291L

NP:S301G

NP:V436I

RdRp

RdRp:S6N

RdRp:S19T

RdRp:I45M

RdRp:Y60N

RdRp:R63H

RdRp:S67V

RdRp:R80K

RdRp:V82I

RdRp:L90I

RdRp:I114V

RdRp:T163A

RdRp:E167G

RdRp:A168T

RdRp:M172V

RdRp:R174K

RdRp:S205P

RdRp:N206Y

RdRp:K275R

Deletions

None

Insertions

None

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