This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (without consensus sequences)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000P861.1
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Display Name: China/LOC_000P861.1/2004
Moming,
A.; Zhu,
Q.; Bai,
Y.; Jin,
J.; Wu,
Q.; Su,
Z.; Tang,
S.; Zhang,
Y.; Shen,
S.; Deng,
F.
Submission details
Submission ID
OR047167.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-03-11 18:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences
Alignment and QC metrics L
Completeness L
98.66%
Length L
12004
Total ambiguous nucs L
0
Total deleted nucs L
2
Total frame shifts L
0
Total inserted nucs L
60
Total SNPs L
1473
Total unknown nucs L
0
Sample details
Earliest release date
2023-08-21
Collection country
China
Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31
Host
Host name scientific
Ixodoidea
Host taxon id
297308
INSDC
INSDC accession L
OR047167.1
NCBI release date
2023-08-21
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
1
A
L:
C
2
G
L:
A
5
G
L:
G
8
T
L:
A
9
C
L:
A
11
T
L:
C
13
A
L:
C
18
G
L:
G
23
T
L:
G
32
A
L:
A
35
G
L:
A
42
G
L:
G
43
C
L:
T
49
C
L:
C
59
T
L:
T
62
C
L:
G
71
C
L:
G
93
A
Show more
Deletions
L:67, L:68
Insertions
ins_L:16:TTTTAACTGGTTTCTTTTTACTATTATTATTAAAAGG, ins_L:0:TCTCCACATTTGGAGCAATAC, ins_L:11922:TC
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
E
126
D
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
223
M
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
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