This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P853.1

Display Name: China/LOC_000P853.1/1979
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047166.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics M

Completeness M
99.98%
Length M
5723
Total ambiguous nucs M
0
Total deleted nucs M
11
Total frame shifts M
0
Total inserted nucs M
369
Total SNPs M
591
Total unknown nucs M
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1979
Collection date (lower bound)
1979-01-01
Collection date (upper bound)
1979-12-31

INSDC

INSDC accession M
OR047166.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:T68C
  • M:G76A
  • M:A80G
  • M:C85T
  • M:A88G
  • M:C92T
  • M:A101G
  • M:A107G
  • M:A112G
  • M:A117G
  • M:C119T
  • M:C126T
  • M:A128G
  • M:G136A
  • M:A146G
  • M:G149A
  • M:G157T
  • M:C162A
    • Deletions
    M:5289-5299
    Insertions
    ins_M:5366:TGGTTGAATTGCGCATTTTGCTTCAGAGCAAGAATGCTGGAGCAGTGATTGGAAAAGGAGGCAAGAATATTAAGGCTCTCCGTACAGACTACAATGCCAGTGTTTCAGT, ins_M:5361:GAACGAGAAAGGAGGAGGGCGCTACAGGCGACAGCGCTGCAGACGCCATTATCCTCTGCTTCTCCGCTGCACGGACGTCGCCGTCGTGCTCGTCTCCCACTCGATTGCGGCCTATTGGTGGATCCATTTAATTCAAGAAAATGGAGACCGAACAGCCAGAAGAAACCTTCCCCAACACCGAAACCAATGGTGAATTTGGTAAACGCCCTGCAGAAGATATGGAAGAGGAGCAAGCCTTTAAAAGATCTAGAAATACTGA, ins_M:5168:G

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:I3M
  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:G22V
  • GPC:H24S
  • GPC:R28E
  • GPC:D33N
  • GPC:T34V
  • GPC:M35V
  • GPC:N41S
  • GPC:P42Q
  • GPC:S44P
  • GPC:P47L
  • GPC:A51T
  • GPC:S53P
  • GPC:I54V
  • GPC:P58S
    • Deletions
    None
    Insertions
    None

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