This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P837.1

Display Name: China/LOC_000P837.1/1988
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047162.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics M

Completeness M
100.00%
Length M
5701
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
335
Total SNPs M
1055
Total unknown nucs M
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1988
Collection date (lower bound)
1988-01-01
Collection date (upper bound)
1988-12-31

INSDC

INSDC accession M
OR047162.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:C4G
  • M:A9T
  • M:A11G
  • M:T12G
  • M:C14G
  • M:G50T
  • M:A51G
  • M:G56A
  • M:A57C
  • M:A70G
  • M:T71A
  • M:A80G
  • M:C81T
  • M:G84T
  • M:C85T
  • M:T86C
  • M:A88G
  • M:A90G
    • Deletions
    None
    Insertions
    ins_M:5:TACGTCCTCTATCCGAGGACAATATATTAAATGGATTTTTGG, ins_M:5171:C, ins_M:5366:GCTCACGTTGCATTGAAGAAGAAACCTCGGGGAGGTCTGGAGCTGTCTTTCCTTCCCTCCCTACCCGGCGGCTCCTCCACTCT, ins_M:5363:GC, ins_M:17:GG, ins_M:0:TCTCTAAGAGACCTGAGTGAGCCCCACCCCCAACTCCTAAGCAGCGGCTCAACAAGGAGGTGGCATCACAGACTCTGATGAGGTATGAACAGGCCTCTCACGAGTGAAAACTTCTGGTTTCAGTGTTTTTGAAAATGTTTCTGCTTCTGTGTGCTTCTTGTGGACTGTAGGTGGTCTACCCTGATGGTGTGTGTTAGCTTTAATA

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:I9V
  • GPC:C15W
  • GPC:G16S
  • GPC:G18K
  • GPC:E19G
  • GPC:T20S
  • GPC:S23L
  • GPC:H24S
  • GPC:E26K
  • GPC:R28Q
  • GPC:N30S
  • GPC:K31N
  • GPC:D33S
    • Deletions
    GPC:197, GPC:209, GPC:210
    Insertions
    ins_GPC:212:QPV

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