This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P7YH.1

Display Name: China/LOC_000P7YH.1/1988
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047142.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:22:52 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics S

Completeness S
100.00%
Length S
1810
Total ambiguous nucs S
0
Total deleted nucs S
2
Total frame shifts S
0
Total inserted nucs S
140
Total SNPs S
216
Total unknown nucs S
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1988
Collection date (lower bound)
1988-01-01
Collection date (upper bound)
1988-12-31

INSDC

INSDC accession S
OR047142.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A13T
  • S:G15C
  • S:C18T
  • S:G20A
  • S:A24T
  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G91A
  • S:G99A
  • S:A118G
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
    • Deletions
    S:1615, S:1633
    Insertions
    ins_S:9:TTG, ins_S:1530:T, ins_S:1667:C, ins_S:0:TCTTCAAACCACTTGTTCATTTCATCTTTGTTATTCACCTCGATTTTATTCTCCATTTTGCA, ins_S:1672:CGCCGCCGAGGACTCAGCTGCCTCCCCCTCGAGCCCCCTCGCTT, ins_S:1577:A, ins_S:6:TTGATTGTTCACAGTCAGTTAC, ins_S:18:TCTA, ins_S:25:CT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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