This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (without consensus sequences)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000P7SV.1
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Display Name: Turkey/LOC_000P7SV.1/2019
Kalaycioglu,
A. T.; Durmaz,
R.; Ari,
O.; Bakir,
M.; Engin,
A.; Dal,
T.
Submission details
Submission ID
OQ954476.1.L/OQ935552.1.M/OQ954468.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:22:52 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-03-11 18:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Alignment and QC metrics L
Completeness L
3.87%
Length L
468
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
50
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
15.32%
Frame shifts M
GPC:532-1685(nt:1684-5147)
Length M
794
Total ambiguous nucs M
0
Total deleted nucs M
28
Total frame shifts M
1
Total inserted nucs M
0
Total SNPs M
119
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
30.98%
Length S
518
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
75
Total unknown nucs S
0
Sample details
Earliest release date
2023-08-15
Collection country
Turkey
Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Isolate name
TR-YOZGAT-C49F-2019
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
OQ954476.1
INSDC accession M
OQ935552.1
INSDC accession S
OQ954468.1
NCBI release date
2023-08-15
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
6715
T
L:
A
6724
G
L:
A
6730
G
L:
G
6733
T
L:
T
6745
C
L:
G
6748
A
L:
A
6751
G
L:
C
6757
T
L:
T
6760
A
L:
C
6766
T
L:
T
6769
C
L:
A
6784
T
L:
T
6800
C
L:
G
6805
A
L:
A
6808
T
L:
A
6811
G
L:
A
6850
G
L:
T
6862
C
Show more
M
M:
A
1688
G
M:
A
1694
G
M:
G
1703
A
M:
T
1706
A
M:
C
1718
T
M:
G
1720
A
M:
C
1721
T
M:
C
1736
T
M:
G
1739
A
M:
C
1745
T
M:
C
1754
T
M:
T
1763
C
M:
C
1766
T
M:
T
1772
C
M:
A
1778
G
M:
C
1781
T
M:
A
1784
G
M:
A
1805
G
Show more
S
S:
C
145
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
189
A
S:
T
199
C
S:
C
208
T
S:
T
211
C
S:
C
217
G
S:
C
244
T
S:
T
250
G
S:
G
256
A
S:
G
262
A
S:
A
268
C
Show more
Deletions
M:1656-1683
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
RdRp
RdRp:
A
2330
T
Deletions
GPC:522-531
Insertions
None
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