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Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
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West Nile Virus
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LOC_000P7RX.1
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Download FASTA
Download metadata TSV
Display Name: Russia/LOC_000P7RX.1/2016-06-24
A. Volynkina,
E. Kotenev &
A. Kolosov
Sample details
Collection date
2016-06-24
Collection date (lower bound)
2016-06-24
Collection date (upper bound)
2016-06-24
Earliest release date
2020-07-27
Collection country
Russia
Isolate name
5-ASTR/HU-2016
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 15:28
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory on Natural Focal Infections
INSDC
NCBI release date
2020-07-27
INSDC accession L
MN624894.1
INSDC accession M
MN624663.1
INSDC accession S
MN624432.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
437
Total SNPs L
42
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
3.61%
Alignment and QC metrics S
Length S
538
Total SNPs S
83
Total inserted nucs S
0
Total deleted nucs S
168
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
42.22%
Alignment and QC metrics M
Length M
435
Total SNPs M
81
Total inserted nucs M
0
Total deleted nucs M
89
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
1
Frame shifts M
GPC:1519-1685(nt:4647-5147)
Completeness M
9.77%
Submission details
Submission ID
MN624894.1.L/MN624663.1.M/MN624432.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 15:28:31 UTC
Date released
2025-09-17 15:31:54 UTC
Files
Annotations
LOC_000P7RX.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
131
A
L:
A
147
G
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
T
218
C
L:
T
229
C
L:
A
240
C
L:
T
241
C
L:
T
253
C
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
Show more
M
M:
T
4649
C
M:
C
4652
T
M:
T
4661
G
M:
A
4664
G
M:
A
4667
G
M:
C
4671
T
M:
T
4676
C
M:
A
4694
T
M:
C
4697
T
M:
A
4713
G
M:
A
4730
G
M:
A
4736
G
M:
T
4742
A
M:
T
4743
C
M:
G
4745
A
M:
C
4748
T
M:
A
4751
G
M:
G
4757
A
Show more
S
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
189
A
S:
T
199
C
S:
T
211
C
S:
C
217
T
S:
C
244
T
S:
T
250
G
S:
G
262
A
Show more
Deletions
M:4558-4646, S:647-814
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
RdRp
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
G
113
D
Deletions
GPC:1490-1518
Insertions
None
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