This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P7M5.1

Display Name: Turkey/LOC_000P7M5.1/2018
Kalaycioglu, A. T.; Durmaz, R.; Ari, O.; Bakir, M.; Engin, A.; Dal, T.

Submission details

Submission ID
OQ954472.1.L/OQ954464.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:22:52 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment and QC metrics L

Completeness L
3.87%
Length L
468
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
49
Total unknown nucs L
0

Alignment and QC metrics S

Completeness S
31.04%
Length S
519
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
78
Total unknown nucs S
0

Sample details

Earliest release date
2023-08-15
Collection country
Turkey
Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Isolate name
TR-SIVAS-C36F-2018

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession L
OQ954472.1
INSDC accession S
OQ954464.1
NCBI release date
2023-08-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C6715T
  • L:A6724G
  • L:A6730G
  • L:G6733T
  • L:T6742C
  • L:T6745C
  • L:G6748A
  • L:C6757T
  • L:T6760A
  • L:C6766T
  • L:T6769C
  • L:A6784T
  • L:T6800C
  • L:G6805A
  • L:A6808T
  • L:A6811G
  • L:A6850G
  • L:T6862C

    • S

  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
  • S:C178A
  • S:T182C
  • S:C187T
  • S:G189A
  • S:T199C
  • S:T211C
  • S:C217T
  • S:C235T
  • S:C244T
  • S:T250G
  • S:G262A
  • S:A268C
  • S:T274C
  • S:T283C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E

    • RdRp

  • RdRp:A2330T
    • Deletions
    None
    Insertions
    None

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