This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P6YJ.1

Display Name: Guinea/LOC_000P6YJ.1/2021-04-09
Naidenova, E. V.; Krasnov, Y. M.; Zakharov, K. S.; Agafonov, D. A.; Senichkina, A. M.; Guseva, N. P.; Katyshev, S. D.; Gurkin, G. A.; Kartashov, M. Y.; Shipovalov, A. V.; Kabanov, A. S.; Boumbaly, S.; Diallo, M. G.; Bah, M. B.

Submission details

Submission ID
PQ361720.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-20 08:39:34 UTC
Date released
2024-12-20 08:43:49 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-20 08:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

Alignment states and QC metrics S

Completeness S
98.62%
Length S
1653
Total ambiguous nucs S
0
Total deleted nucs S
18
Total frame shifts S
0
Total inserted nucs S
19
Total SNPs S
234
Total unknown nucs S
3

Sample details

Earliest release date
2024-10-02
Collection subdivision level 1
Kindia
Collection country
Guinea
Collection date
2021-04-09
Collection date (lower bound)
2021-04-09
Collection date (upper bound)
2021-04-09
Isolate name
5437

Host

Host name scientific
Amblyomma variegatum
Host taxon id
34610

INSDC

INSDC accession S
PQ361720.1
NCBI release date
2024-10-02

Nucleotide mutations

Substitutions

S

  • S:G20T
  • S:T46A
  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:C115T
  • S:A121G
  • S:G134A
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
    • Deletions
    S:1542-1547, S:1573, S:1574, S:1610-1619
    Insertions
    ins_S:1579:ATC, ins_S:1563:TATG, ins_S:1566:AT, ins_S:1629:CTATCTTTCA

    Amino acid mutations

    Substitutions

    NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F
    • Deletions
    None
    Insertions
    None