This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P6YJ.1

Display Name: Italy/LOC_000P6YJ.1
S. Manzara, M. Muscillo, G. La Rosa, C. Marianelli, P. Cattani, G. Fadda, A. Faustini, V. Fano, S. Zaniratti, L. Tribuzi & C. A. Perucci

Sample details

Collection date (upper bound)
2001-10-30
Earliest release date
2001-10-30
Collection country
Italy
Collection subdivision level 1
Rome
Isolate name
IT88-5597

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-18 10:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Muscillo M., Environmental Hygiene, Istituto Superiore di Sanita', Viale Regina Elena 299, Rome, RM 00161

INSDC

NCBI release date
2001-10-30
INSDC accession CV-A16

Host

Is lab host
True

Alignment and QC metrics CV-A16

Length CV-A16
216
Total SNPs CV-A16
48
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
0
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
2.91%

Submission details

Submission ID
AJ309241.1.CV-A16
Submitting group
Date submitted
2025-11-18 10:33:51 UTC
Date released
2025-11-18 10:38:40 UTC

Clade

Clade CV-A16
B1a

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2610G
  • T2613A
  • A2619T
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • G2628A
  • T2634C
  • A2637T
  • A2640G
  • C2643T
  • C2644A
  • C2658T
  • T2670A
  • A2673G
  • C2679A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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