This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P6YJ.1

Display Name: Oman/LOC_000P6YJ.1/2014
B. Atkinson, S. Al-Abri, H. Al-Kindi, S. Bawakir, A. Al-Jardani, I. Al-Abaidani, S. Al-Mahrooqi, A. Al-Maani, S. Almahrouqi, B. Al-Rawahi, N. Beeching & R. Hewson

Sample details

Collection date
2014
Collection date (lower bound)
2014-01-01
Collection date (upper bound)
2014-12-31
Earliest release date
2018-05-01
Collection country
Oman
Isolate name
Oman 2014-860P

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-27 12:22insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Public Health England, Research

INSDC

NCBI release date
2018-05-01
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
1449
Total SNPs S
166
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
86.66%
Total stop codons S
0

Submission details

Submission ID
MH037288.1.S
Submitting group
Date submitted
2025-11-27 12:22:07 UTC
Date released
2025-11-27 12:26:21 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G67A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:A109G
  • S:A118G
  • S:C166T
  • S:G169A
  • S:T172C
  • S:C178A
  • S:T182C
  • S:G190A
  • S:G196A
  • S:T199C
  • S:C208T
  • S:C217T
  • S:G229A
  • S:C235T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N9S
  • NP:R15K
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:A307V
  • NP:E322D
  • NP:Q405L
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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