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Crimean-Congo Hemorrhagic Fever Virus
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Crimean-Congo Hemorrhagic Fever Virus
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Crimean-Congo Hemorrhagic Fever Virus
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LOC_000P6YJ.1
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Download FASTA
Download metadata TSV
Display Name: Italy/LOC_000P6YJ.1/2017-04-21
E. Mancuso,
A. Polci,
S. G. D'Alessio,
L. Toma,
M. Di Luca,
M. Orsini,
M. Di Domenico,
M. Marcacci,
G. Mancini,
F. Spina,
M. Goffredo &
F. Monaco
Sample details
Collection date
2017-04-21
Collection date (lower bound)
2017-04-21
Collection date (upper bound)
2017-04-21
Earliest release date
2018-08-20
Collection country
Italy
Isolate name
HrTE24364
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-06 18:10
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Viral, Foreign Deseases of Animals
INSDC
NCBI release date
2018-08-20
INSDC accession M
MH595794.1
Host
Host taxon id
72862
Host name scientific
Hyalomma rufipes
Alignment and QC metrics M
Length M
1816
Total SNPs M
74
Total inserted nucs M
0
Total deleted nucs M
3087
Total ambiguous nucs M
0
Total unknown nucs M
364
Total frame shifts M
1
Frame shifts M
GPC:440-1685(nt:1408-5147)
Completeness M
84.59%
Submission details
Submission ID
MH595794.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-06 18:10:19 UTC
Date released
2025-11-06 18:16:12 UTC
Files
Annotations
LOC_000P6YJ.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
M:
C
320
T
M:
T
332
C
M:
G
335
T
M:
A
348
C
M:
T
351
C
M:
C
357
T
M:
T
360
C
M:
A
377
G
M:
T
385
C
M:
A
387
C
M:
C
404
T
M:
T
405
C
M:
T
406
C
M:
C
410
T
M:
G
414
A
M:
A
418
C
M:
C
426
T
M:
C
427
T
Show more
Deletions
M:678-1407, M:2070-4146, M:4740-5018, M:5172
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
S
86
R
GPC:
S
90
P
GPC:
V
98
A
GPC:
T
99
P
GPC:
L
105
P
GPC:
G
108
S
GPC:
D
109
A
GPC:
P
112
F
GPC:
P
123
L
GPC:
V
125
G
GPC:
L
129
I
Deletions
GPC:196-439
Insertions
None
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