This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P6YJ.1

Display Name: Sudan/LOC_000P6YJ.1/2018
L. Chitimia-Dobler

Sample details

Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Earliest release date
2019-09-10
Collection country
Sudan
Isolate name
IMB01

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-24 05:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Hohenheim, Parasitology

INSDC

NCBI release date
2019-09-10
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma impeltatum

Alignment and QC metrics S

Length S
237
Total SNPs S
50
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
14.17%

Submission details

Submission ID
MN097144.1.S
Submitting group
Date submitted
2025-10-24 05:43:54 UTC
Date released
2025-10-24 05:48:01 UTC

Lineage

Segment S Lineage
I

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C244T
  • S:T253C
  • S:G259T
  • S:A265C
  • S:A268C
  • S:T273A
  • S:T274C
  • S:A280T
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298C
  • S:T313A
  • S:C316T
  • S:T319A
  • S:A322G
  • S:A327G
  • S:G328A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:F73Y
  • NP:K91R
  • NP:A100T
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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