This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
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Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000P4UU.1
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Download FASTA
Download metadata TSV
Display Name: United_Arab_Emirates/LOC_000P4UU.1/2019
J. V. Camp,
P. Weidinger,
S. Ramaswamy,
D. O. Kannan,
B. M. Osman,
J. Kolodziejek,
N. Karuvantevida,
A. Abou Tayoun,
T. Loney,
N. Nowotny &
N. Wolf
Submission details
Submission ID
MW548503.1.L/MW548493.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:39:00 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-18 15:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Medical University of Vienna, Center for Virology
Alignment and QC metrics L
Completeness L
98.89%
Frame shifts L
RdRp:764-766(nt:2364-2374)
Length L
11924
Total ambiguous nucs L
0
Total deleted nucs L
55
Total frame shifts L
1
Total inserted nucs L
6
Total SNPs L
1602
Total unknown nucs L
0
Alignment and QC metrics S
Completeness S
98.86%
Length S
1656
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
3
Total SNPs S
192
Total unknown nucs S
0
Sample details
Earliest release date
2022-02-22
Collection subdivision level 1
Al Ain
Collection country
United Arab Emirates
Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Isolate name
UAE/CT219M1/2019
Host
Host name scientific
Hyalomma dromedarii
Host taxon id
34626
INSDC
INSDC accession L
MW548503.1
INSDC accession S
MW548493.1
NCBI release date
2022-02-22
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
73
G
L:
A
91
G
L:
G
98
A
L:
G
112
A
L:
T
131
A
L:
A
147
G
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
G
178
A
L:
T
181
A
L:
G
190
C
L:
C
193
T
L:
C
199
T
L:
C
208
T
L:
T
229
C
L:
T
241
C
Show more
S
S:
G
54
A
S:
G
67
A
S:
T
79
C
S:
C
82
T
S:
A
109
G
S:
G
134
A
S:
T
135
C
S:
G
136
A
S:
A
148
T
S:
C
166
T
S:
C
178
A
S:
T
181
C
S:
G
184
A
S:
C
187
A
S:
G
190
A
S:
G
196
A
S:
T
199
C
S:
G
202
A
Show more
Deletions
L:2375, L:11921-11937, L:11943-11964, L:11976-11981, L:11985, L:11986, L:11996, L:11997, L:12013-12015, L:12018, L:12034
Insertions
ins_S:1577:A, ins_S:1594:TA, ins_L:12004:GTGGA, ins_L:2363:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
V
27
T
NP:
D
44
E
NP:
V
83
A
NP:
T
124
A
NP:
G
125
S
NP:
V
141
I
NP:
A
154
S
NP:
L
179
Q
NP:
D
186
E
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
A
271
T
NP:
D
274
E
NP:
S
301
G
NP:
A
307
P
NP:
K
428
R
NP:
V
436
I
NP:
N
442
S
RdRp
RdRp:
D
8
N
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
T
163
A
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
177
T
RdRp:
S
201
G
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
C
RdRp:
L
216
I
RdRp:
K
219
R
Show more
Deletions
RdRp:767
Insertions
None
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