This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P4SY.1

Display Name: China/LOC_000P4SY.1/2004
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047138.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 12:41:48 UTC
Date released
2024-12-29 12:45:35 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 12:41insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment states and QC metrics S

Completeness S
100.00%
Length S
1673
Total ambiguous nucs S
0
Total deleted nucs S
1
Total frame shifts S
0
Total inserted nucs S
2
Total SNPs S
204
Total unknown nucs S
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession S
OR047138.1
NCBI release date
2023-08-21

Nucleotide mutations

Substitutions

S

  • S:C38A
  • S:T48C
  • S:G51A
  • S:G54A
  • S:A61G
  • S:C97T
  • S:G99A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:C187T
  • S:G190A
  • S:G196A
  • S:C217T
  • S:G229A
    • Deletions
    S:1617
    Insertions
    ins_S:1612:C, ins_S:1577:A

    Amino acid mutations

    Substitutions

    NP

  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:G125D
  • NP:A146T
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:D262N
  • NP:R270K
  • NP:S301G
  • NP:M353L
  • NP:V436I
    • Deletions
    None
    Insertions
    None