This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000P4KC.1
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Download FASTA
Download metadata TSV
Display Name: Uganda/LOC_000P4KC.1/2018-09-22
S. Balinandi,
S. Whitmer,
S. Mulei,
L. Nyakarahuka,
A. Tumusiime,
J. Kyondo,
L. Mugisha,
M. Almberg,
J. Lutwama,
T. Shoemaker &
J. D. Klena
Submission details
Submission ID
MW464976.1.L/MW464978.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:39:00 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-18 15:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
CDC, VSPB
Alignment and QC metrics L
Completeness L
99.73%
Length L
12088
Total ambiguous nucs L
0
Total deleted nucs L
32
Total frame shifts L
0
Total inserted nucs L
45
Total SNPs L
2011
Total unknown nucs L
0
Alignment and QC metrics S
Completeness S
97.25%
Length S
1627
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
1
Total SNPs S
271
Total unknown nucs S
0
Sample details
Earliest release date
2021-09-19
Collection country
Uganda
Collection date
2018-09-22
Collection date (lower bound)
2018-09-22
Collection date (upper bound)
2018-09-22
Isolate name
201900913
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
MW464976.1
INSDC accession S
MW464978.1
NCBI release date
2021-09-19
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
A
42
G
L:
G
43
T
L:
C
48
T
L:
A
53
G
L:
C
64
T
L:
G
71
T
L:
A
72
G
L:
A
73
G
L:
C
82
A
L:
G
93
A
L:
T
97
C
L:
A
109
G
L:
T
115
C
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
A
Show more
S
S:
A
50
G
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
A
78
C
S:
A
81
G
S:
A
85
G
S:
A
118
G
S:
G
122
A
S:
A
124
C
S:
A
130
T
S:
G
136
A
S:
T
144
A
S:
C
154
T
S:
T
157
C
S:
C
166
T
S:
T
175
C
Show more
Deletions
L:57, L:58, L:11939-11948, L:11992, L:11996, L:11997, L:12018-12025, L:12036-12041, L:12070-12072
Insertions
ins_S:1581:C, ins_L:12101:CAGGG, ins_L:12108:GCAC, ins_L:65:GCC, ins_L:12090:AGT, ins_L:12105:GGGGATCGGA, ins_L:11930:AATCAACAGCAT, ins_L:12063:CAC, ins_L:12048:GTTAA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
F
30
Y
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
A
271
V
NP:
S
275
N
NP:
I
277
V
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
V
436
I
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
201
G
RdRp:
A
202
S
RdRp:
S
205
P
Show more
Deletions
None
Insertions
None
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