This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P4JE.1

Display Name: Uganda/LOC_000P4JE.1/2018-01-31
S. Balinandi, S. Whitmer, S. Mulei, L. Nyakarahuka, A. Tumusiime, J. Kyondo, L. Mugisha, M. Almberg, J. Lutwama, T. Shoemaker & J. D. Klena

Submission details

Submission ID
MW464975.1.S
Submitting group
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:39:00 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
CDC, VSPB

Alignment and QC metrics S

Completeness S
85.77%
Length S
1607
Total ambiguous nucs S
4
Total deleted nucs S
8
Total frame shifts S
0
Total inserted nucs S
9
Total SNPs S
239
Total unknown nucs S
168

Sample details

Earliest release date
2021-09-19
Collection country
Uganda
Collection date
2018-01-31
Collection date (lower bound)
2018-01-31
Collection date (upper bound)
2018-01-31
Isolate name
201900912

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession S
NCBI release date
2021-09-19

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A50G
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:A78C
  • S:A81G
  • S:A85G
  • S:A109G
  • S:C115T
  • S:A118G
  • S:G122A
  • S:A124C
  • S:A130T
  • S:G136A
  • S:T144A
  • S:C154T
  • S:T157C
    • Deletions
    S:1520-1523, S:1530, S:1531, S:1535, S:1536
    Insertions
    ins_S:1548:TTT, ins_S:1579:G, ins_S:1508:TGTGT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N8T
  • NP:N9S
  • NP:G23S
  • NP:F30Y
  • NP:D116G
  • NP:T124A
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275K
  • NP:I277V
  • NP:I284V
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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