This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Zaire
Test organism (without alignment)
West Nile Virus
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Status
LOC_000P4FM.1
Download FASTA
Display Name: Pakistan/LOC_000P4FM.1/2023-01-01
M. Umair,
M. Ammar,
S.A. Haider,
Z. Jamal,
M. Salman
Submission details
Submission ID
OR728658.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:40 UTC
Date released
2024-09-19 17:28:36 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-09-19 17:22
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
Alignment states and QC metrics
Completeness
79.86%
Length
10470
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
329
Total stop codons
0
Total unknown nucs
1663
Sample details
Collection country
Pakistan
Collection date
2023-01-01
Isolate name
WNV/PAK-01/2023
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
OR728658.1
NCBI release date
2023-11-08
NCBI update date
2023-11-08
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
G
420
A
C
474
T
T
510
C
T
513
C
T
528
C
C
534
T
T
585
C
A
630
G
T
634
G
T
666
C
C
708
T
C
745
T
G
789
A
G
873
A
G
903
A
C
911
A
A
919
C
T
945
C
Show more
Deletions
10827
Insertions
None
Amino acid mutations
Substitutions
NS1
NS1:
S
99
P
NS1:
L
111
F
NS1:
E
289
D
NS1:
T
298
I
NS1:
D
326
G
NS2A
NS2A:
H
119
Y
NS2A:
V
155
A
NS2A:
I
183
V
NS2A:
D
226
N
NS2B
NS2B:
A
36
T
NS2B:
I
107
V
NS3
NS3:
T
356
I
NS3:
S
421
N
NS4A
NS4A:
A
85
T
env
env:
F
90
Y
env:
I
126
T
env:
I
135
V
env:
V
159
I
env:
L
167
F
env:
V
491
I
prM
prM:
S
57
A
prM:
T
149
N
Deletions
None
Insertions
None
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