This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000P4DR.1
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Display Name: Uganda/LOC_000P4DR.1/2018-10-30
S. Balinandi,
S. Whitmer,
S. Mulei,
L. Nyakarahuka,
A. Tumusiime,
J. Kyondo,
L. Mugisha,
M. Almberg,
J. Lutwama,
T. Shoemaker &
J. D. Klena
Submission details
Submission ID
MW464961.1.L/MW464962.1.M/MW464963.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:39:00 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-18 15:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
CDC, VSPB
Alignment and QC metrics L
Completeness L
99.74%
Length L
12014
Total ambiguous nucs L
0
Total deleted nucs L
73
Total frame shifts L
0
Total inserted nucs L
10
Total SNPs L
1979
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
99.66%
Frame shifts M
GPC:10-50(nt:119-241),GPC:57-62(nt:261-277),GPC:65-69(nt:285-299),GPC:72-84(nt:306-343),GPC:91-94(nt:362-374),GPC:101-181(nt:392-635),GPC:189-1685(nt:655-5147)
Length M
5328
Total ambiguous nucs M
0
Total deleted nucs M
230
Total frame shifts M
7
Total inserted nucs M
210
Total SNPs M
1285
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
96.71%
Length S
1618
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
1
Total SNPs S
265
Total unknown nucs S
0
Sample details
Earliest release date
2021-09-19
Collection country
Uganda
Collection date
2018-10-30
Collection date (lower bound)
2018-10-30
Collection date (upper bound)
2018-10-30
Isolate name
201900899
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
MW464961.1
INSDC accession M
MW464962.1
INSDC accession S
MW464963.1
NCBI release date
2021-09-19
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
23
T
L:
G
32
T
L:
A
35
G
L:
A
42
G
L:
G
43
T
L:
C
48
T
L:
A
50
G
L:
G
57
T
L:
C
59
T
L:
C
63
G
L:
T
65
C
L:
G
71
T
L:
A
72
G
L:
A
73
G
L:
C
82
A
L:
G
93
A
L:
A
109
G
L:
T
115
C
Show more
M
M:
G
50
T
M:
G
56
C
M:
G
60
A
M:
T
65
A
M:
T
68
C
M:
A
69
G
M:
A
70
T
M:
T
71
G
M:
T
72
G
M:
G
76
A
M:
C
89
T
M:
A
93
T
M:
C
125
T
M:
G
134
C
M:
G
143
T
M:
G
145
A
M:
A
148
G
M:
G
149
C
Show more
S
S:
A
50
G
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
A
78
C
S:
A
81
G
S:
A
85
G
S:
A
109
G
S:
A
118
G
S:
G
122
A
S:
A
124
C
S:
A
130
T
S:
G
136
A
S:
T
144
A
S:
C
154
T
S:
T
157
C
S:
C
166
T
Show more
Deletions
L:11932, L:11944-11946, L:12013-12050, L:12058-12088, M:51, M:52, M:82, M:97-118, M:126-128, M:135-140, M:242-254, M:271, M:272, M:321-323, M:333-335, M:344-351, M:375-385, M:390, M:391, M:579-584, M:591-602, M:621-626, M:654, M:723, M:747-752, M:761-778, M:793-801, M:1091, M:1459-1463, M:2583-2585, M:5147-5165, M:5174-5185, M:5191-5204, M:5224, M:5232-5234, M:5264, M:5265,...
Show more
Insertions
ins_S:1581:C, ins_M:485:ACCT, ins_M:229:AG, ins_M:446:ACCA, ins_M:635:CGGCTCACCGATAGCTG, ins_M:737:CATTGTA, ins_M:299:TCTGGTGAGC, ins_M:288:AGGTTACCA, ins_M:89:CA, ins_M:5251:CTTTTT, ins_M:260:TCATGGA, ins_M:284:GTGTGCTGGAA, ins_M:361:AGTACGCA, ins_M:464:TCACC, ins_M:277:G, ins_M:1447:GAAAG, ins_M:611:GA, ins_M:78:CGATGTTCTGCCTTAGGCTCG, ins_M:195:GCTTAGGAC, ins_M:1103:A, ins_M:62:GG,...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
R
182
A
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
F
30
Y
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
V
436
I
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
L
189
M
RdRp:
S
201
G
RdRp:
A
202
P
Show more
Deletions
GPC:51-54, GPC:85-87, GPC:95-98, GPC:100, GPC:188
Insertions
ins_GPC:56:SW, ins_GPC:76:LVSLAQILX, ins_GPC:182:HR*LRATQH
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