This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P481.1

Display Name: Iraq/LOC_000P481.1/2023-09-15
Sulaiman, R. R.; Babashekh, M. O.

Submission details

Submission ID
OR713754.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-20 08:39:34 UTC
Date released
2024-12-20 08:44:19 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-20 08:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
University of Sulaimani, College of Veterinary Medicine, Microbiology

Alignment states and QC metrics S

Completeness S
30.86%
Length S
516
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
71
Total unknown nucs S
0

Sample details

Earliest release date
2024-04-27
Collection country
Iraq
Collection date
2023-09-15
Collection date (lower bound)
2023-09-15
Collection date (upper bound)
2023-09-15
Isolate name
CCHF/sharazoor/Iraq

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession S
OR713754.1
NCBI release date
2024-04-27

Nucleotide mutations

Substitutions

S

  • S:T157C
  • S:C166T
  • S:G169A
  • S:T172C
  • S:C178A
  • S:T182C
  • S:C187T
  • S:G190A
  • S:G196A
  • S:A209G
  • S:C214T
  • S:C217T
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G256A
  • S:G259A
  • S:A268T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:S52G
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:R177K
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None