This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000P2ER.1
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Download FASTA
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Display Name: Turkey/LOC_000P2ER.1/2015-07-20
D'Addiego,
J.; Wand,
N.; Afrough,
B.; Fletcher,
T.; Kurosaki,
Y.; Leblebicioglu,
H.; Hewson,
R.
Submission details
Submission ID
OQ866633.1.L/OQ866632.1.M/OQ866631.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-23 19:47:50 UTC
Date released
2024-12-23 19:52:19 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-23 19:47
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
Alignment states and QC metrics L
Completeness L
99.26%
Length L
12051
Total ambiguous nucs L
0
Total deleted nucs L
15
Total frame shifts L
0
Total inserted nucs L
47
Total SNPs L
1280
Total unknown nucs L
0
Alignment states and QC metrics M
Completeness M
97.95%
Frame shifts M
GPC:78(nt:322-323)
Length M
5203
Total ambiguous nucs M
0
Total deleted nucs M
58
Total frame shifts M
1
Total inserted nucs M
5
Total SNPs M
1003
Total unknown nucs M
0
Alignment states and QC metrics S
Completeness S
99.04%
Length S
1657
Total ambiguous nucs S
0
Total deleted nucs S
16
Total frame shifts S
0
Total inserted nucs S
17
Total SNPs S
230
Total unknown nucs S
0
Sample details
Earliest release date
2023-08-15
Collection country
Turkey
Collection date
2015-07-20
Collection date (lower bound)
2015-07-20
Collection date (upper bound)
2015-07-20
Isolate name
Turkey_2015
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
OQ866633.1
INSDC accession M
OQ866632.1
INSDC accession S
OQ866631.1
NCBI release date
2023-08-15
Nucleotide mutations
Substitutions
L
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
L:
T
131
A
L:
T
139
C
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
A
240
C
L:
T
254
A
L:
A
262
G
L:
G
264
A
L:
C
265
T
L:
A
268
G
Show more
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
M:
A
112
G
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
A
85
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
Show more
Deletions
L:11981-11989, L:12068-12072, L:12084, M:167-169, M:318-321, M:5224-5274, S:1542-1547, S:1610-1619
Insertions
ins_S:1563:TATG, ins_S:1566:AT, ins_S:1629:CTATCTTTCA, ins_S:1577:A, ins_M:323:G, ins_M:5171:T, ins_M:158:CAG, ins_L:12099:CATTCCAGTTTCAT, ins_L:12106:AGGGTGTGGGGG, ins_L:11971:CCATACCAT, ins_L:11924:G, ins_L:12108:ACGATTT, ins_L:12078:TGTC
Amino acid mutations
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
L
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
T
34
N
GPC:
M
35
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
Show more
Deletions
GPC:76, GPC:77
Insertions
None
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