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Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
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LOC_000P2CV.1
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Download FASTA
Download metadata TSV
Display Name: Kazakhstan/LOC_000P2CV.1/2018
Abuova,
G. N.; Pshenichnaya,
N. Y.; Karan,
L. S.; Berdaliyeva,
F. A.; Aliyev,
D. S.; Sadyhova,
D. K.; Polukchi,
T. V.; Nurmagambet,
S. D.
Submission details
Submission ID
OQ190969.1.M/OQ190968.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-03 04:35:40 UTC
Date released
2025-06-03 04:39:38 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-03 04:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Central Research Institute of Epidemiology, Department of molecular diagnostic and epidemiology
Alignment and QC metrics M
Completeness M
76.46%
Length M
4103
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
452
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
91.33%
Length S
1528
Total ambiguous nucs S
0
Total deleted nucs S
3
Total frame shifts S
0
Total inserted nucs S
4
Total SNPs S
203
Total unknown nucs S
0
Sample details
Earliest release date
2023-06-10
Collection subdivision level 1
Turkestan region
Collection country
Kazakhstan
Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Isolate name
KAZ/20/2018
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession M
OQ190969.1
INSDC accession S
OQ190968.1
NCBI release date
2023-06-10
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
M:
T
1246
C
M:
A
1253
G
M:
T
1262
C
M:
C
1289
T
M:
G
1301
A
M:
G
1304
A
M:
G
1310
C
M:
A
1311
G
M:
C
1316
T
M:
C
1355
T
M:
T
1367
C
M:
T
1370
C
M:
C
1385
T
M:
T
1390
C
M:
C
1415
T
M:
T
1426
C
M:
T
1427
C
M:
T
1433
G
Show more
S
S:
A
109
G
S:
C
115
T
S:
A
118
G
S:
C
166
T
S:
G
169
A
S:
T
172
C
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
C
208
T
S:
C
217
T
S:
G
229
A
S:
C
235
T
S:
A
268
C
S:
G
271
A
S:
G
292
A
S:
C
295
T
Show more
Deletions
S:1541-1543
Insertions
ins_S:1584:C, ins_S:1532:CCA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
V
385
A
GPC:
I
407
V
GPC:
V
433
A
GPC:
I
445
T
GPC:
V
449
I
GPC:
H
453
Q
GPC:
Y
455
H
GPC:
V
459
T
GPC:
N
473
S
GPC:
D
484
N
GPC:
K
510
R
GPC:
P
523
S
GPC:
S
524
G
GPC:
I
541
V
GPC:
I
561
V
GPC:
N
592
S
GPC:
V
598
I
GPC:
R
603
K
Show more
NP
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
V
436
I
Deletions
None
Insertions
None
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