This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (without consensus sequences)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
Browse
Submit
SeqSets
Login
Loculus
Browse
Submit
SeqSets
Login
Docs
API docs
LOC_000P0VW.1
Download
Download FASTA
Download metadata TSV
Display Name: Uganda/LOC_000P0VW.1/2019-07-22
Balinandi,
S.; Whitmer,
S.; Mulei,
S.; Nyakarahuka,
L.; Tumusiime,
A.; Kyondo,
J.; Mugisha,
L.; Almberg,
M.; Lutwama,
J.; Shoemaker,
T.; Klena,
J. D.
Submission details
Submission ID
MW464985.1.L/MW464986.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:22:21 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-03-11 18:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
CDC, VSPB
Alignment and QC metrics L
Completeness L
77.24%
Length L
11807
Total ambiguous nucs L
4
Total deleted nucs L
2
Total frame shifts L
0
Total inserted nucs L
3
Total SNPs L
1558
Total unknown nucs L
2450
Alignment and QC metrics S
Completeness S
94.32%
Length S
1495
Total ambiguous nucs S
0
Total deleted nucs S
134
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
217
Total unknown nucs S
52
Sample details
Earliest release date
2021-09-19
Collection country
Uganda
Collection date
2019-07-22
Collection date (lower bound)
2019-07-22
Collection date (upper bound)
2019-07-22
Isolate name
2019000821
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
MW464985.1
INSDC accession S
MW464986.1
NCBI release date
2021-09-19
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
A
42
G
L:
G
43
T
L:
C
48
T
L:
A
50
G
L:
A
53
G
L:
C
64
T
L:
G
71
T
L:
A
72
G
L:
A
73
G
L:
C
82
A
L:
G
93
A
L:
A
109
G
L:
T
115
C
L:
T
131
A
L:
C
148
T
L:
T
151
C
Show more
S
S:
A
50
G
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
A
78
C
S:
A
81
G
S:
A
85
G
S:
A
109
G
S:
A
118
G
S:
G
122
A
S:
A
124
C
S:
A
130
T
S:
G
136
A
S:
T
144
A
S:
C
154
T
S:
T
157
C
S:
C
166
T
Show more
Deletions
L:57, L:58, S:1509-1518, S:1523-1533, S:1545-1556, S:1560, S:1564-1663
Insertions
ins_L:65:GCC
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
F
30
Y
NP:
T
111
A
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
V
436
I
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
A
399
S
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue