This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NZPB.1

Display Name: Turkey/LOC_000NZPB.1/2021
Kalaycioglu, A. T.; Oguzoglu, T. C.; Ari, O.; Durmaz, R.; Engin, A.; Bakir, M.; Erdem, E.; Dal, T.

Submission details

Submission ID
ON640906.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-20 08:39:34 UTC
Date released
2024-12-20 08:43:49 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-20 08:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics L

Completeness L
69.62%
Length L
8429
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
875
Total unknown nucs L
0

Sample details

Earliest release date
2023-02-21
Collection country
Turkey
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Isolate name
TR-SIVAS-C13F-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession L
ON640906.1
NCBI release date
2023-02-21

Nucleotide mutations

Substitutions

L

  • L:G3523A
  • L:T3529C
  • L:G3568A
  • L:C3571T
  • L:C3572T
  • L:C3586T
  • L:T3589G
  • L:C3595T
  • L:T3607C
  • L:G3613A
  • L:G3628A
  • L:A3630G
  • L:T3646C
  • L:G3652A
  • L:G3675A
  • L:A3679G
  • L:A3685T
  • L:G3711A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    RdRp

  • RdRp:D1171E
  • RdRp:K1185R
  • RdRp:R1200K
  • RdRp:R1212K
  • RdRp:V1228I
  • RdRp:V1241L
  • RdRp:K1282M
  • RdRp:V1317I
  • RdRp:T1351K
  • RdRp:I1363V
  • RdRp:N1367D
  • RdRp:L1386I
  • RdRp:R1427S
  • RdRp:S1436N
  • RdRp:N1445S
  • RdRp:S1454V
  • RdRp:R1456K
  • RdRp:I1458L
    • Deletions
    None
    Insertions
    None