This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NYT4.1

Display Name: Pakistan/LOC_000NYT4.1/2018
Umair, M.

Submission details

Submission ID
MZ287861.1.S
Submitting group
Date submitted
2025-06-03 04:35:40 UTC
Date released
2025-06-03 04:39:08 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-03 04:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute of Health, Department of Virology

Alignment and QC metrics S

Completeness S
14.83%
Length S
248
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
38
Total unknown nucs S
0

Sample details

Earliest release date
2022-01-12
Collection country
Pakistan
Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Isolate name
NIH-84/Pakistan/2018

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession S
NCBI release date
2022-01-12

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G292A
  • S:C295T
  • S:A298T
  • S:C310T
  • S:C316T
  • S:A322G
  • S:A325G
  • S:G328A
  • S:T334G
  • S:A337G
  • S:G367A
  • S:C370T
  • S:T382C
  • S:T385C
  • S:G391A
  • S:A394G
  • S:C400T
  • S:C403G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
    • Deletions
    None
    Insertions
    None

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