This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NYC1.1

Display Name: Pakistan/LOC_000NYC1.1/2019-03-02
Shahid MF, ; Yaqub T, ; Ali M, ; Ul-Rahman A, ; Bente DA, ; Shahid, M. F.; Yaqub, T.; Ali, M.; Ul-Rahman, A.; Bente, D. A.

Submission details

Submission ID
MW915552.1.S
Submitting group
Date submitted
2025-06-03 04:35:40 UTC
Date released
2025-06-03 04:39:08 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-03 04:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Veterinary and Animal Sciences, Institute of Microbiology

Alignment and QC metrics S

Completeness S
11.66%
Length S
195
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
26
Total unknown nucs S
0

Sample details

Earliest release date
2021-04-21
Collection country
Pakistan
Collection date
2019-03-02
Collection date (lower bound)
2019-03-02
Collection date (upper bound)
2019-03-02
Isolate name
PAK-LHR-T/415

Host

Host name scientific
Ixodoidea
Host taxon id

INSDC

INSDC accession S
NCBI release date
2021-04-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G367A
  • S:C370T
  • S:A379G
  • S:T385C
  • S:G397A
  • S:C400T
  • S:C403A
  • S:C406T
  • S:G409C
  • S:G418A
  • S:G421A
  • S:A425T
  • S:G428A
  • S:G429A
  • S:T430C
  • S:A439G
  • S:C445T
  • S:T446C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:T124S
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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