This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NXR9.1

Display Name: Uganda/LOC_000NXR9.1/2021-04-27
Nyakarahuka, L.; Whitmer, S.; Kyondo, J.; Mulei, S.; Cossaboom, C. M.; Telford, C. T.; Tumusiime, A.; Akurut, G. G.; Namanya, D.; Kamugisha, K.; Baluku, J.; Lutwama, J.; Balinandi, S.; Shoemaker, T.; Klena, J. D.; Whitmer, S. L. M.

Submission details

Submission ID
OL690431.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-20 08:39:34 UTC
Date released
2024-12-20 08:43:49 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-20 08:39insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
The Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics S

Completeness S
92.46%
Length S
1568
Total ambiguous nucs S
1
Total deleted nucs S
29
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
249
Total unknown nucs S
50

Sample details

Earliest release date
2022-10-19
Collection subdivision level 1
Kikuube district
Collection country
Uganda
Collection date
2021-04-27
Collection date (lower bound)
2021-04-27
Collection date (upper bound)
2021-04-27
Isolate name
2021000741

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession S
OL690431.1
NCBI release date
2022-10-19

Nucleotide mutations

Substitutions

S

  • S:A50G
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:A78C
  • S:A81G
  • S:A85G
  • S:A118G
  • S:G122A
  • S:A124C
  • S:A130T
  • S:G136A
  • S:T144A
  • S:C154T
  • S:T157C
  • S:C166T
  • S:T175C
    • Deletions
    S:1516, S:1572-1583, S:1613-1628
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:N8T
  • NP:N9S
  • NP:G23S
  • NP:F30Y
  • NP:T111A
  • NP:D116G
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:I277V
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:V436I
    • Deletions
    None
    Insertions
    None