This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NW8B.1

Display Name: Turkey/LOC_000NW8B.1/2017
Timurkan, M. O.; Aydin, H.

Submission details

Submission ID
MT178309.1.M
Submitting group
Date submitted
2025-06-03 04:35:40 UTC
Date released
2025-06-03 04:39:08 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-03 04:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Ataturk University, Faculty of Veterinary Medicine, Departmet of Virology

Alignment and QC metrics M

Completeness M
7.86%
Length M
422
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
77
Total unknown nucs M
0

Sample details

Earliest release date
2020-03-28
Collection country
Turkey
Collection date
2017
Collection date (lower bound)
2017-01-01
Collection date (upper bound)
2017-12-31
Isolate name
TR/TUNCELI2015/OHE/2/M

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession M
NCBI release date
2020-03-28

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:C4671T
  • M:T4676C
  • M:A4694T
  • M:C4697T
  • M:A4701C
  • M:A4713G
  • M:A4720G
  • M:C4722A
  • M:T4723G
  • M:A4729G
  • M:A4730G
  • M:A4736G
  • M:T4742A
  • M:T4743C
  • M:G4745A
  • M:C4748T
  • M:A4751G
  • M:G4757A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H1527Y
  • GPC:E1534D
  • GPC:K1537Q
  • GPC:N1541D
  • GPC:K1543R
  • GPC:L1544S
  • GPC:Q1546R
  • GPC:S1564D
  • GPC:S1589G
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595L
  • GPC:M1597V
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:K1652R
  • GPC:N1655S
  • GPC:K1661R
    • Deletions
    None
    Insertions
    None

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