This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Zaire
Test organism (without alignment)
West Nile Virus
Browse
Submit
SeqSets
Login
Loculus
Browse
Submit
SeqSets
Login
Docs
API docs
Governance
Status
LOC_000NMY5.1
Download FASTA
Display Name: Italy/LOC_000NMY5.1/2022-10-12
F. Monaco,
F. Valleriani,
A. Polci,
G. Savini,
B. Secondini
Submission details
Submission ID
OQ689697.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:40 UTC
Date released
2024-09-19 17:28:36 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-09-19 17:22
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Animals Foreign Diseases
Alignment states and QC metrics
Completeness
99.38%
Length
10961
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
471
Total stop codons
0
Total unknown nucs
0
Sample details
Collection subdivision level 1
Sicily
Collection country
Italy
Collection date
2022-10-12
Isolate name
NRG1424
Host
Host name scientific
Equus caballus
Host taxon id
9796
INSDC
INSDC accession
OQ689697.1
NCBI release date
2023-07-29
NCBI update date
2023-07-29
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
T
195
A
T
234
C
C
315
T
G
354
A
T
367
C
C
483
T
G
492
A
G
495
T
T
528
C
C
561
T
C
600
T
T
606
C
A
630
G
T
639
C
T
666
C
C
672
T
C
732
T
G
786
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NS1
NS1:
A
70
S
NS2B
NS2B:
V
103
A
NS3
NS3:
L
4
M
NS3:
P
249
T
NS3:
T
356
I
NS3:
K
399
R
NS4A
NS4A:
A
85
V
NS4B
NS4B:
R
164
C
NS4B:
E
249
D
NS5
NS5:
A
860
T
env
env:
I
126
T
env:
V
159
I
env:
L
167
F
Deletions
None
Insertions
None
Load sequences