This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Zaire
Test organism (without alignment)
West Nile Virus
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Status
LOC_000NKZ5.1
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Display Name: Italy/LOC_000NKZ5.1/2022-09-12
G. Savini,
F. Monaco,
G. Mencattelli,
V. Curini,
L. Teodori,
A. Polci
Submission details
Submission ID
OP850021.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:40 UTC
Date released
2024-09-19 17:28:06 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-09-19 17:22
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Animals Foreign Diseases
Alignment states and QC metrics
Completeness
99.40%
Length
10963
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
487
Total stop codons
0
Total unknown nucs
0
Sample details
Collection subdivision level 1
Lombardy
Collection country
Italy
Collection date
2022-09-12
Host
Host name scientific
Corvus cornix
Host taxon id
181096
INSDC
INSDC accession
OP850021.1
NCBI release date
2023-06-05
NCBI update date
2023-06-05
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
A
156
T
G
168
A
T
195
A
C
210
T
G
219
A
T
234
C
C
282
T
G
354
A
G
447
T
T
477
C
C
483
T
G
492
A
G
495
T
T
510
C
C
561
T
C
600
T
T
606
C
A
630
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NS1
NS1:
A
70
S
NS2A
NS2A:
R
122
H
NS2B
NS2B:
V
103
A
NS3
NS3:
T
356
I
NS4A
NS4A:
A
85
V
NS4B
NS4B:
I
245
M
NS4B:
E
249
D
NS5
NS5:
K
432
R
env
env:
R
93
K
env:
I
126
T
env:
V
159
I
env:
L
167
F
Deletions
None
Insertions
None
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