This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NCGD.1

Display Name: Zambia/LOC_000NCGD.1/2016
Kajihara, M.; Simuunza, M.; Saasa, N.; Dautu, G.; Mori-Kajihara, A.; Qiu, Y.; Nakao, R.; Eto, Y.; Furumoto, H.; Hang'ombe, B. M.; Orba, Y.; Sawa, H.; Simulundu, E.; Fukushi, S.; Morikawa, S.; Saijo, M.; Arikawa, J.; Kabilika, S.; Monze, M.; Mukonka, V.; Mweene, A.; Takada, A.; Yoshimatsu, K.

Submission details

Submission ID
LC534905.1.S
Submitting group
Date submitted
2025-06-03 04:35:40 UTC
Date released
2025-06-03 04:38:07 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-03 04:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Research Center for Zoonosis Control; Kita 20 Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0020

Alignment and QC metrics S

Completeness S
13.16%
Length S
220
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
23
Total unknown nucs S
0

Sample details

Earliest release date
2021-05-14
Collection country
Zambia
Collection date
2016
Collection date (lower bound)
2016-01-01
Collection date (upper bound)
2016-12-31

Host

Host name scientific
Hyalomma truncatum
Host taxon id

INSDC

INSDC accession S
NCBI release date
2021-05-14

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A322G
  • S:A325G
  • S:A327G
  • S:G346A
  • S:A355G
  • S:A358C
  • S:T364C
  • S:C370T
  • S:G397A
  • S:C400T
  • S:G418A
  • S:G421A
  • S:A425G
  • S:C427T
  • S:G428A
  • S:G429A
  • S:A439G
  • S:G451A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:K91R
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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