This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NBUP.1

Display Name: Iran/LOC_000NBUP.1/2015-08-02
Fazlalipour, M.; Baniasadi, V.; Mirghiasi, S. M.; Jalali, T.; Khakifirouz, S.; Azad-Manjiri, S.; Mahmoodi, V.; Naderi, H. R.; Zarandi, R.; Salehi-Vaziri, M.; Mirghiasi, M.

Submission details

Submission ID
KU201598.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 11:38:38 UTC
Date released
2025-04-03 11:40:21 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-03 11:38insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Tehran University of Medical Sciences, Virology

Alignment and QC metrics S

Completeness S
26.20%
Length S
438
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
56
Total unknown nucs S
0

Sample details

Earliest release date
2016-01-19
Collection country
Iran
Collection date
2015-08-02
Collection date (lower bound)
2015-08-02
Collection date (upper bound)
2015-08-02
Isolate name
Iran-4579

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession S
KU201598.1
NCBI release date
2016-01-19

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C166T
  • S:G169A
  • S:T172C
  • S:C178A
  • S:T182C
  • S:G190A
  • S:T193C
  • S:G196A
  • S:C208T
  • S:C217T
  • S:G229A
  • S:C235T
  • S:A268C
  • S:G271A
  • S:T289C
  • S:G292A
  • S:C295T
  • S:A298C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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