This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000NAJA.1

Display Name: Turkey/LOC_000NAJA.1
Orkun, O.; Karaer, Z.; Cakmak, A.; Nalbantoglu, S.

Submission details

Submission ID
KX425596.1.S
Submitting group
Date submitted
2025-06-03 04:35:40 UTC
Date released
2025-06-03 04:38:07 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-03 04:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Ankara University Veterinary Faculty, Department of Parasitology

Alignment and QC metrics S

Completeness S
42.40%
Frame shifts S
NP:281-483(nt:896-1504)
Length S
309
Total ambiguous nucs S
0
Total deleted nucs S
400
Total frame shifts S
1
Total inserted nucs S
0
Total SNPs S
45
Total unknown nucs S
0

Sample details

Earliest release date
2017-04-12
Collection country
Turkey
Collection date (upper bound)
2017-04-12
Isolate name
Orkun-Cbk/Hm-78A

Host

Host name scientific
Hyalomma marginatum
Host taxon id

INSDC

INSDC accession S
NCBI release date
2017-04-12

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T199C
  • S:T211C
  • S:C217T
  • S:C244T
  • S:T250G
  • S:G262A
  • S:A268C
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
    • Deletions
    S:496-895
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
    • Deletions
    NP:148-280
    Insertions
    None

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