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LOC_000N9EL.1
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Display Name: Russia/LOC_000N9EL.1/1984
Lukashev,
A. N.; Klimentov,
A. S.; Smirnova,
S. E.; Dzagurova,
T. K.; Drexler,
J. F.; Gmyl,
A. P.
Submission details
Submission ID
KX013465.1.L/KX013466.1.M/KX013467.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-03 04:35:40 UTC
Date released
2025-06-03 04:37:37 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-03 04:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Alignment and QC metrics L
Completeness L
99.87%
Length L
12110
Total ambiguous nucs L
0
Total deleted nucs L
10
Total frame shifts L
0
Total inserted nucs L
28
Total SNPs L
1298
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
99.53%
Frame shifts M
GPC:78(nt:322-323)
Length M
5339
Total ambiguous nucs M
0
Total deleted nucs M
14
Total frame shifts M
1
Total inserted nucs M
12
Total SNPs M
1028
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
97.61%
Length S
1634
Total ambiguous nucs S
1
Total deleted nucs S
16
Total frame shifts S
0
Total inserted nucs S
17
Total SNPs S
240
Total unknown nucs S
0
Sample details
Earliest release date
2016-12-07
Collection subdivision level 1
Astrakhan
Collection country
Russia
Collection date
1984
Collection date (lower bound)
1984-01-01
Collection date (upper bound)
1984-12-31
Isolate name
K229_243
Host
Host name scientific
Ixodoidea
Host taxon id
297308
INSDC
INSDC accession L
KX013465.1
INSDC accession M
KX013466.1
INSDC accession S
KX013467.1
NCBI release date
2016-12-07
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
A
42
T
L:
G
43
C
L:
T
49
C
L:
T
58
C
L:
C
59
T
L:
C
63
T
L:
C
64
G
L:
T
66
C
L:
A
72
G
L:
A
73
T
L:
C
82
T
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
L:
T
114
C
Show more
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
A
57
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
G
84
A
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
M:
A
112
G
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
Show more
Deletions
L:11979, L:12050-12056, L:12073, L:12084, M:165-167, M:318-321, M:5232-5234, M:5238-5241, S:1542-1547, S:1610-1619
Insertions
ins_S:1563:TATG, ins_S:1629:CTATCTTTCA, ins_S:1577:A, ins_S:1566:AT, ins_M:5243:GACGCTG, ins_M:5171:T, ins_M:323:G, ins_M:158:CAG, ins_L:12108:GGTGTGGGGG, ins_L:11928:CG, ins_L:67:C, ins_L:12099:CATTCCAGTTTCAT, ins_L:11973:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
H
21
Q
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
E
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
T
NP:
E
108
D
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
E
187
G
NP:
D
199
E
NP:
I
246
V
NP:
K
252
R
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
Show more
RdRp
RdRp:
S
6
N
RdRp:
I
13
T
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
70
Q
RdRp:
R
80
K
RdRp:
R
166
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
261
M
RdRp:
A
263
S
RdRp:
K
275
R
Show more
Deletions
GPC:76, GPC:77, GPC:105-111
Insertions
ins_GPC:126:NPTSTIS
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