This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MDDL.1

Display Name: Namibia/LOC_000MDDL.1/2020
H. D. Guggemos, M. Fendt, C. Hieke, V. Heyde, J. K. E. Mfune, C. Borgemeister & S. Junglen

Submission details

Submission ID
MW436416.1
Submitting group
Date submitted
2025-07-15 21:03:54 UTC
Date released
2025-07-15 21:08:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-15 21:03insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institute of Virology, Charite - Universitaetsmedizin Berlin

Alignment and QC metrics

Completeness
9.67%
Length
1066
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
239
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2021-03-30
Collection country
Namibia
Collection date
2020
Collection date (lower bound)
2020-01-01
Collection date (upper bound)
2020-12-31

Host

Host name scientific
Culex univittatus
Host taxon id

INSDC

INSDC accession
NCBI release date
2021-03-30
NCBI update date
2021-03-30

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G1098A
  • T1107C
  • G1113A
  • G1116A
  • G1125C
  • G1131T
  • C1134G
  • T1143C
  • C1146T
  • T1149C
  • T1150C
  • G1152A
  • T1155C
  • A1156T
  • C1158G
  • C1164T
  • T1167C
  • C1168T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:E55D
  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159I
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T
    • Deletions
    None
    Insertions
    None

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