This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MDDL.1

Germany/LOC_000MDDL.1/2024-08-29
J. Braune, L. Pechstein, C. Meisel, T. Meyer, J. Melchert, V. M. Corman, C. Franke & T. Schneider

Charite - Universitatsmedizin Berlin, Institute of Virology

Sample details

Collection date
2024-08-29
Earliest release date
2025-10-25
Sampling location
Germany
Isolate name
D24-06667/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-16 08:45insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-10-25
NCBI update date
2025-10-25
INSDC accession

Host

Host

Submission details

Submission ID
PQ328937.1
Submitting group
Date submitted
2026-04-16 08:45:43 UTC
Date released
2026-04-16 09:28:03 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
297
Total ambiguous nucs
2
Length
1548 (14%)
Amino Acid Mutations from founder clade
  • NS1:K44R
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C2127A
  • A2139G
  • C2145A
  • T2148C
  • T2154C
  • G2163A
  • A2169G
  • T2178C
  • C2181A
  • A2184G
  • A2193C
  • C2196T
  • C2199A
  • A2204G
  • G2211T
  • G2214A
  • A2215C
  • A2220C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:S9G
  • NS1:Y34F
  • NS1:K44R
  • NS1:K51A
  • NS1:V71I
  • NS1:E94N
  • NS1:S99A
  • NS1:T105A
  • NS1:I113M
  • NS1:L123I
  • NS1:V135I
  • NS1:K141E
  • NS1:Q146A
  • NS1:L153M
  • NS1:K170R
  • NS1:V171I
  • NS1:S174T
  • NS1:L192M

NS2A

  • NS2A:M34I
  • NS2A:L38M
  • NS2A:I39L

env

  • env:K413R
  • env:V442I
  • env:L483M
Deletions
N/A
Insertions
N/A

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