This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M9HF.1

Display Name: Slovakia/LOC_000M9HF.1/2018
Cabanova, V.

Submission details

Submission ID
MN912556.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-07 13:34:12 UTC
Date released
2025-04-07 13:38:48 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-07 13:34insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
the Institute of Virology, Biomedical Research Center SAS

Alignment and QC metrics

Completeness
2.56%
Length
282
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
66
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2020-09-15
Collection country
Slovakia
Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31

Host

Host name scientific
Culex pipiens
Host taxon id
7175

INSDC

INSDC accession
MN912556.1
NCBI release date
2020-09-15
NCBI update date
2020-09-15

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C1560T
  • A1562G
  • T1563C
  • A1566C
  • C1569T
  • G1575T
  • A1579T
  • T1581A
  • A1587T
  • A1588G
  • A1590G
  • A1594T
  • G1596C
  • T1600C
  • C1605T
  • T1608C
  • T1611A
  • C1620T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T
  • env:I253V
    • Deletions
    None
    Insertions
    None

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