This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M659.1

Display Name: South_Africa/LOC_000M659.1
F. J. Burt & R. Swanepoel

Submission details

Submission ID
AY905641.1.S
Submitting group
Date submitted
2025-07-17 07:58:49 UTC
Date released
2025-07-17 07:59:12 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-17 07:58insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute for Communicable Diseases, Special Pathogens Unit

Alignment and QC metrics S

Completeness S
26.85%
Length S
450
Total ambiguous nucs S
1
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
38
Total unknown nucs S
0

Sample details

Earliest release date
2005-06-01
Collection country
South Africa
Collection date (upper bound)
2005-06-01
Isolate name
spu234/99

INSDC

INSDC accession S
NCBI release date
2005-06-01

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G189A
  • S:T199C
  • S:G202A
  • S:C217T
  • S:G229A
  • S:A234T
  • S:C235T
  • S:A247G
  • S:G271A
  • S:C295T
  • S:A298G
  • S:A322G
  • S:A325G
  • S:A327G
  • S:G346A
  • S:A355G
  • S:A358C
  • S:C370A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R45K
  • NP:D60V
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
    • Deletions
    None
    Insertions
    None

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