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LOC_000M53E.1
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Download FASTA
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Display Name: Hungary/LOC_000M53E.1/2023-10-05
A. Nagy,
G. E. Toth,
D. Cadar &
K. Kerenyi
Submission details
Submission ID
PV596761.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-20 15:19:59 UTC
Date released
2025-06-20 15:27:53 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-20 15:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses
Alignment and QC metrics
Completeness
69.34%
Length
10770
Total ambiguous nucs
0
Total deleted nucs
19
Total frame shifts
0
Total inserted nucs
34
Total SNPs
1598
Total stop codons
0
Total unknown nucs
3108
Sample details
Earliest release date
2025-05-13
Collection subdivision level 1
Mezobereny
Collection country
Hungary
Collection date
2023-10-05
Collection date (lower bound)
2023-10-05
Collection date (upper bound)
2023-10-05
Isolate name
5408
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV596761.1
NCBI release date
2025-05-13
NCBI update date
2025-05-13
Lineage
Lineage
2
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
123
T
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
T
199
C
C
204
T
C
210
T
C
216
G
G
219
A
G
222
C
A
231
T
T
234
C
C
246
T
C
255
T
G
363
A
Show more
Deletions
6994-6996, 10467-10470, 10484-10487, 10494-10501
Insertions
ins_10408:TGTATTGAGT, ins_10461:AG, ins_7006:TTGAGA, ins_10452:AGA, ins_10417:GTTGTAGTGTTTA
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
Y
34
F
NS1:
K
44
R
NS1:
K
51
A
NS1:
V
71
I
NS1:
E
94
N
NS1:
S
99
A
NS1:
T
105
A
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
NS1:
L
192
M
NS1:
I
194
V
NS1:
R
205
G
NS1:
L
287
I
NS1:
E
289
D
NS1:
T
298
A
NS1:
Y
323
F
NS1:
D
326
E
Show more
NS2A
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
R
167
K
NS2A:
I
183
V
NS2A:
R
188
K
NS2A:
A
193
S
NS2A:
S
201
C
NS2A:
L
203
I
NS2A:
L
212
V
NS2A:
I
223
M
NS2B
NS2B:
E
73
K
NS2B:
M
88
I
NS2B:
V
103
A
NS2B:
V
119
I
NS2B:
V
120
I
NS3
NS3:
K
11
R
NS3:
Q
92
H
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
203
K
NS3:
R
215
K
NS3:
R
218
K
NS3:
A
233
S
NS3:
V
283
I
NS3:
S
302
A
NS3:
S
331
A
NS3:
L
336
M
NS3:
S
347
T
NS3:
T
356
V
NS3:
T
436
E
NS3:
E
439
D
NS3:
V
450
I
NS3:
L
537
F
Show more
NS4A
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
S
14
G
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
V
23
T
NS4B:
K
24
R
NS4B:
N
26
T
NS4B:
F
27
T
NS4B:
S
28
L
NS4B:
M
29
G
NS4B:
G
30
V
NS4B:
T
48
A
NS4B:
T
116
A
NS4B:
I
168
V
NS4B:
M
177
V
NS4B:
L
183
M
Show more
NS5
NS5:
Q
18
H
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
R
247
K
NS5:
Y
254
F
NS5:
R
287
K
NS5:
R
288
K
NS5:
H
296
Q
NS5:
E
298
A
NS5:
D
312
E
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
T
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
L
312
A
env:
A
369
S
env:
K
413
R
env:
V
442
I
env:
L
483
M
prM
prM:
M
44
L
prM:
D
46
E
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
None
Insertions
ins_NS4B:31:N
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