This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M53E.1

Display Name: LOC_000M53E.1
J. E. Honig, J. C. Osborne & S. T. Nichol

Submission details

Submission ID
AY389508.2.L
Submitting group
Date submitted
2025-07-01 17:30:02 UTC
Date released
2025-07-01 17:30:39 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-01 17:30insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Special Pathogens Branch, Division of Viral and Rickettsial Diseases

Alignment and QC metrics L

Completeness L
100.00%
Length L
12160
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
52
Total SNPs L
9
Total unknown nucs L
0

Sample details

Earliest release date
2003-10-06
Collection date (upper bound)
2003-10-06

INSDC

INSDC accession L
NCBI release date
2003-10-06

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G3216A
  • L:C4117A
  • L:C5054A
  • L:T5065A
  • L:C5100A
  • L:C5798T
  • L:A5830T
  • L:T5875C
  • L:A12099T
    • Deletions
    None
    Insertions
    ins_L:12099:CATTTCAGCTTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:G1047E
  • RdRp:P1660T
  • RdRp:T1675N
    • Deletions
    None
    Insertions
    None

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